4RU1 | pdb_00004ru1

Crystal structure of carbohydrate transporter ACEI_1806 from Acidothermus cellulolyticus 11B, TARGET EFI-510965, in complex with myo-inositol

PDB DOI: https://doi.org/10.2210/pdb4RU1/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Acidothermus cellulolyticus 11B
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2014-11-17 Released: 2014-12-17
Deposition Author(s): Patskovsky, Y., Toro, R., Bhosle, R., Al Obaidi, N., Morisco, L.L., Wasserman, S.R., Chamala, S., Attonito, J.D., Scott Glenn, A., Chowdhury, S., Lafleur, J., Hillerich, B., Siede, R.D., Love, J., Whalen, K.L., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free:
0.226 (Depositor), 0.219 (DCC)
R-Value Work:
0.185 (Depositor), 0.186 (DCC)
R-Value Observed:
0.187 (Depositor)

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of carbohydrate transporter ACEI_1806 from Acidothermus cellulolyticus, TARGET EFI-510965.

Patskovsky, Y., Toro, R., Bhosle, R., Al Obaidi, N., Chamala, S., Scott Glenn, A., Attonito, J.D., Chowdhury, S., Lafleur, J., Siedel, R.D., Morisco, L.L., Wasserman, S.R., Hillerich, B., Love, J., Whalen, K.L., Gerlt, J.A., Almo, S.C.

To be published.

Macromolecule Content

Total Structure Weight: 387.75 kDa
Atom Count: 29,498
Modeled Residue Count: 3,437
Deposited Residue Count: 3,648
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Monosaccharide ABC transporter substrate-binding protein, CUT2 family	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	304	Acidothermus cellulolyticus 11B	Mutation(s): 0 Gene Names: Acel_1806
UniProt
Find proteins for A0LVW8 (Acidothermus cellulolyticus (strain ATCC 43068 / DSM 8971 / 11B)) Explore A0LVW8 Go to UniProtKB: A0LVW8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0LVW8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CIT Query on CIT Download:Ideal Coordinates CCD File SDF format, chain R [auth E] SDF format, chain O [auth C] MOL2 format, chain R [auth E] MOL2 format, chain O [auth C] mmCIF format, chain R [auth E] mmCIF format, chain O [auth C]	O [auth C], R [auth E]	CITRIC ACID C₆ H₈ O₇ KRKNYBCHXYNGOX-UHFFFAOYSA-N		Interactions Focus chain O [auth C] Focus chain R [auth E] Interactions & Density Focus chain O [auth C] Focus chain R [auth E]
INS Query on INS Download:Ideal Coordinates CCD File SDF format, chain M [auth A] SDF format, chain N [auth B] SDF format, chain S [auth E] SDF format, chain T [auth F] SDF format, chain W [auth I] SDF format, chain X [auth J] SDF format, chain Y [auth K] SDF format, chain Z [auth L] SDF format, chain V [auth H] SDF format, chain U [auth G] SDF format, chain Q [auth D] SDF format, chain P [auth C] MOL2 format, chain M [auth A] MOL2 format, chain N [auth B] MOL2 format, chain S [auth E] MOL2 format, chain T [auth F] MOL2 format, chain W [auth I] MOL2 format, chain X [auth J] MOL2 format, chain Y [auth K] MOL2 format, chain Z [auth L] MOL2 format, chain V [auth H] MOL2 format, chain U [auth G] MOL2 format, chain Q [auth D] MOL2 format, chain P [auth C] mmCIF format, chain M [auth A] mmCIF format, chain N [auth B] mmCIF format, chain S [auth E] mmCIF format, chain T [auth F] mmCIF format, chain W [auth I] mmCIF format, chain X [auth J] mmCIF format, chain Y [auth K] mmCIF format, chain Z [auth L] mmCIF format, chain V [auth H] mmCIF format, chain U [auth G] mmCIF format, chain Q [auth D] mmCIF format, chain P [auth C]	M [auth A] N [auth B] P [auth C] Q [auth D] S [auth E] M [auth A], N [auth B], P [auth C], Q [auth D], S [auth E], T [auth F], U [auth G], V [auth H], W [auth I], X [auth J], Y [auth K], Z [auth L]	1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE C₆ H₁₂ O₆ CDAISMWEOUEBRE-GPIVLXJGSA-N		Interactions Focus chain M [auth A] Focus chain N [auth B] Focus chain P [auth C] Focus chain Q [auth D] Focus chain S [auth E] Focus chain T [auth F] Focus chain U [auth G] Focus chain V [auth H] Focus chain W [auth I] Focus chain X [auth J] Focus chain Y [auth K] Focus chain Z [auth L] Interactions & Density Focus chain M [auth A] Focus chain N [auth B] Focus chain P [auth C] Focus chain Q [auth D] Focus chain S [auth E] Focus chain T [auth F] Focus chain U [auth G] Focus chain V [auth H] Focus chain W [auth I] Focus chain X [auth J] Focus chain Y [auth K] Focus chain Z [auth L]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.226 (Depositor), 0.219 (DCC)
R-Value Work: 0.185 (Depositor), 0.186 (DCC)
R-Value Observed: 0.187 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 52.537	α = 90
b = 149.976	β = 91.85
c = 221.631	γ = 90

Software Package:

Software Name	Purpose
SHELX	model building
ARP/wARP	model building
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
SHELX	phasing

Structure Validation

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Ligand Structure Quality Assessment

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2014-12-17

Deposition Author(s):

Enzyme Function Initiative (EFI)

Revision History (Full details and data files)

Version 1.0: 2014-12-17
Type: Initial release
Version 1.1: 2018-01-24
Changes: Structure summary
Version 1.2: 2024-11-27
Changes: Data collection, Database references, Derived calculations, Structure summary