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Crystal structure of carbohydrate transporter ACEI_1806 from Acidothermus cellulolyticus 11B, TARGET EFI-510965, in complex with myo-inositol
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4 294 PROTEIN (10 MM HEPES PH 7.5, 5 MM DTT, 10 MM MYO-INOSITOL), RESERVOIR: 0.1 M CITRIC ACID:NAOH, PH 4.0, 25% PEG3350, CRYOPROTECTION: RESERVOIR SOLUTION, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K
Crystal Properties Matthews coefficient Solvent content 2.27 45.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.537 α = 90 b = 149.976 β = 91.85 c = 221.631 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE MIRRORS 2014-10-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 89.8 0.087 16.1 4.8 543373 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 89.2 0.56 0.56 2.7 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 50 471418 14974 89.54 0.18666 0.18544 0.1863 0.22558 0.2187 RANDOM 20.607
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.55 -0.42 0.41 0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.761 r_dihedral_angle_4_deg 18.444 r_dihedral_angle_3_deg 13.516 r_scbond_it 9.579 r_scbond_other 9.579 r_scangle_other 9.371 r_long_range_B_refined 8.943 r_long_range_B_other 8.943 r_dihedral_angle_1_deg 6.172 r_mcangle_it 4.138
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.761 r_dihedral_angle_4_deg 18.444 r_dihedral_angle_3_deg 13.516 r_scbond_it 9.579 r_scbond_other 9.579 r_scangle_other 9.371 r_long_range_B_refined 8.943 r_long_range_B_other 8.943 r_dihedral_angle_1_deg 6.172 r_mcangle_it 4.138 r_mcangle_other 4.138 r_mcbond_it 3.83 r_mcbond_other 3.829 r_angle_refined_deg 1.948 r_angle_other_deg 1.233 r_chiral_restr 0.126 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 25745 Nucleic Acid Atoms Solvent Atoms 3386 Heterogen Atoms 170
Software Software Software Name Purpose SHELX model building ARP/wARP model building REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling SHELX phasing