4RFX | pdb_00004rfx

Crystal Structure of the Dynactin DCTN1 Fragment involved in Dynein Interaction

PDB DOI: https://doi.org/10.2210/pdb4RFX/pdb

Classification: PROTEIN TRANSPORT
Organism(s): Gallus gallus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2014-09-29 Released: 2015-10-07
Deposition Author(s): Findeisen, P., Eckert, C., Kollmar, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free:
0.277 (Depositor), 0.273 (DCC)
R-Value Work:
0.258 (Depositor), 0.262 (DCC)
R-Value Observed:
0.259 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history.

Literature

Crystal Structure of the Dynactin DCTN1 Fragment involved in Dynein Interaction

Findeisen, P., Eckert, C., Kollmar, M.

To be published.

Macromolecule Content

Total Structure Weight: 82.04 kDa
Atom Count: 4,065
Modeled Residue Count: 494
Deposited Residue Count: 705
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Dynactin subunit 1	A, B, C, D, E	141	Gallus gallus	Mutation(s): 1 Gene Names: DCTN1
UniProt
Find proteins for P35458 (Gallus gallus) Explore P35458 Go to UniProtKB: P35458
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P35458
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.277 (Depositor), 0.273 (DCC)
R-Value Work: 0.258 (Depositor), 0.262 (DCC)
R-Value Observed: 0.259 (Depositor)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 155.32	α = 90
b = 155.32	β = 90
c = 129.26	γ = 90

Software Package:

Software Name	Purpose
SHELXD	phasing
REFMAC	refinement
XDS	data reduction
XDS	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2015-10-07

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2015-10-07
Type: Initial release
Version 1.1: 2017-11-22
Changes: Refinement description
Version 1.2: 2019-11-06
Changes: Data collection, Database references, Source and taxonomy, Structure summary
Version 1.3: 2024-02-28
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.