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Crystal Structure of the Dynactin DCTN1 Fragment involved in Dynein Interaction
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 0.1 M Na-citrate pH 5.5, 5% PEG 4000, 0.1 M
ammonium sulphate, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 4.75 74.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 155.32 α = 90 b = 155.32 β = 90 c = 129.26 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2012-02-24 M MAD 2 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-12-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.979 SLS X10SA 2 SYNCHROTRON SLS BEAMLINE X10SA 1.033 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.9 49.7 99.9 26.3 35602 35585 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.9 2.95 99.88 27.2 1725
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.9 49.7 1.78 35649 32808 1733 96.89 0.25935 0.25841 0.2619 0.27705 0.2731 RANDOM 108.667
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.6 -4.6 9.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.714 r_dihedral_angle_4_deg 21.756 r_dihedral_angle_3_deg 18.846 r_dihedral_angle_1_deg 4.59 r_angle_other_deg 1.649 r_angle_refined_deg 1.623 r_chiral_restr 0.093 r_bond_refined_d 0.015 r_bond_other_d 0.009 r_gen_planes_refined 0.008
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.714 r_dihedral_angle_4_deg 21.756 r_dihedral_angle_3_deg 18.846 r_dihedral_angle_1_deg 4.59 r_angle_other_deg 1.649 r_angle_refined_deg 1.623 r_chiral_restr 0.093 r_bond_refined_d 0.015 r_bond_other_d 0.009 r_gen_planes_refined 0.008 r_gen_planes_other 0.006 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4065 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose SHELXD phasing REFMAC refinement XDS data reduction XDS data scaling