4PUH | pdb_00004puh

Oxidized BolA2 from Arabidopsis thaliana


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 
    0.204 (Depositor), 0.205 (DCC) 
  • R-Value Work: 
    0.177 (Depositor), 0.176 (DCC) 
  • R-Value Observed: 
    0.179 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history

Literature

Structural and spectroscopic insights into BolA-glutaredoxin complexes.

Roret, T.Tsan, P.Couturier, J.Zhang, B.Johnson, M.K.Rouhier, N.Didierjean, C.

(2014) J Biological Chem 289: 24588-24598

  • DOI: https://doi.org/10.1074/jbc.M114.572701
  • Primary Citation Related Structures: 
    2MM9, 2MMA, 4PUG, 4PUH, 4PUI

  • PubMed Abstract: 

    BolA proteins are defined as stress-responsive transcriptional regulators, but they also participate in iron metabolism. Although they can form [2Fe-2S]-containing complexes with monothiol glutaredoxins (Grx), structural details are lacking. Three Arabidopsis thaliana BolA structures were solved. They differ primarily by the size of a loop referred to as the variable [H/C] loop, which contains an important cysteine (BolA_C group) or histidine (BolA_H group) residue. From three-dimensional modeling and spectroscopic analyses of A. thaliana GrxS14-BolA1 holo-heterodimer (BolA_H), we provide evidence for the coordination of a Rieske-type [2Fe-2S] cluster. For BolA_C members, the cysteine could replace the histidine as a ligand. NMR interaction experiments using apoproteins indicate that a completely different heterodimer was formed involving the nucleic acid binding site of BolA and the C-terminal tail of Grx. The possible biological importance of these complexes is discussed considering the physiological functions previously assigned to BolA and to Grx-BolA or Grx-Grx complexes.


  • Organizational Affiliation
    • From the Université de Lorraine and CNRS, UMR 7036 CRM2, BioMod group, 54506 Vandœuvre-lès-Nancy, France.

Macromolecule Content 

  • Total Structure Weight: 20.78 kDa 
  • Atom Count: 1,472 
  • Modeled Residue Count: 162 
  • Deposited Residue Count: 186 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
At5g09830
A, B
93Arabidopsis thalianaMutation(s): 0 
Gene Names: AT5G09830At5g09830
UniProt
Find proteins for Q9FIC3 (Arabidopsis thaliana)
Explore Q9FIC3 
Go to UniProtKB:  Q9FIC3
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9FIC3
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free:  0.204 (Depositor), 0.205 (DCC) 
  • R-Value Work:  0.177 (Depositor), 0.176 (DCC) 
  • R-Value Observed: 0.179 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 29.64α = 90
b = 81.419β = 108.62
c = 33.112γ = 90
Software Package:
Software NamePurpose
Xnemodata collection
MOLREPphasing
PHENIXrefinement
XDSdata reduction
SCALAdata scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-04-15
    Type: Initial release
  • Version 1.1: 2015-04-22
    Changes: Database references
  • Version 1.2: 2023-09-20
    Changes: Data collection, Database references, Refinement description
  • Version 1.3: 2024-10-30
    Changes: Structure summary