4OZ7 | pdb_00004oz7

Methanobactin production by methanotrophic bacteria and their structural diversity from Methylosinus strains: Insights into copper release

• PDB DOI: https://doi.org/10.2210/pdb4OZ7/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Methylosinus sporium
• Mutation(s): No 


• Deposited: 2014-02-14 Released: 2015-05-20 
• Deposition Author(s): El Ghazouani, A., Basle, A., Dennison, C.
• Funding Organization(s): Natural Environment Research Council (NERC)

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.65 Å
• R-Value Free: 
  0.251 (Depositor) 
• R-Value Work: 
  0.221 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.222 (Depositor) 

Literature

Methanobactin production by methanotrophic bacteria and their structural diversity from Methylosinus strains: Insights into copper release

El Ghazouani, A., Basle, A., Dennison, C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 2.38 kDa 
• Atom Count: 181 
• Modeled Residue Count: 20 
• Deposited Residue Count: 20 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Methanobactin	A, B	10	Methylosinus sporium	Mutation(s): 0

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CU1	C [auth A], D [auth B]	COPPER (I) ION Cu VMQMZMRVKUZKQL-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.65 Å
• R-Value Free:  0.251 (Depositor) 
• R-Value Work:  0.221 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.222 (Depositor) 

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 36.72	α = 90
b = 39.42	β = 90
c = 40.24	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2015-05-20 
Deposition Author(s): El Ghazouani, A., Basle, A., Dennison, C.

---

Funding Organization	Location	Grant Number
Natural Environment Research Council (NERC)	United Kingdom	NE/F00608X

Revision History  

• Version 1.0: 2015-05-20
  Type: Initial release
  
• Version 2.0: 2023-11-15
  Changes: Atomic model, Data collection, Database references, Derived calculations, Other, Refinement description, Source and taxonomy
• Version 2.1: 2024-11-13
  Changes: Structure summary