4OZ7 | pdb_00004oz7

Methanobactin production by methanotrophic bacteria and their structural diversity from Methylosinus strains: Insights into copper release

PDB DOI: https://doi.org/10.2210/pdb4OZ7/pdb

Classification: OXIDOREDUCTASE
Organism(s): Methylosinus sporium
Mutation(s): No

Deposited: 2014-02-14 Released: 2015-05-20
Deposition Author(s): El Ghazouani, A., Basle, A., Dennison, C.
Funding Organization(s): Natural Environment Research Council (NERC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.65 Å
R-Value Free:
0.251 (Depositor)
R-Value Work:
0.221 (Depositor), 0.222 (DCC)
R-Value Observed:
0.222 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 2.1 of the entry. See complete history.

Literature

Methanobactin production by methanotrophic bacteria and their structural diversity from Methylosinus strains: Insights into copper release

El Ghazouani, A., Basle, A., Dennison, C.

To be published.

Macromolecule Content

Total Structure Weight: 2.38 kDa
Atom Count: 181
Modeled Residue Count: 20
Deposited Residue Count: 20
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Methanobactin	A, B	10	Methylosinus sporium	Mutation(s): 0

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CU1 Query on CU1 Download:Ideal Coordinates CCD File SDF format, chain D [auth B] SDF format, chain C [auth A] MOL2 format, chain D [auth B] MOL2 format, chain C [auth A] mmCIF format, chain D [auth B] mmCIF format, chain C [auth A]	C [auth A], D [auth B]	COPPER (I) ION Cu VMQMZMRVKUZKQL-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain D [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.65 Å
R-Value Free: 0.251 (Depositor)
R-Value Work: 0.221 (Depositor), 0.222 (DCC)
R-Value Observed: 0.222 (Depositor)

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 36.72	α = 90
b = 39.42	β = 90
c = 40.24	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2015-05-20

Deposition Author(s):

El Ghazouani, A.

Funding Organization	Location	Grant Number
Natural Environment Research Council (NERC)	United Kingdom	NE/F00608X

Revision History (Full details and data files)

Version 1.0: 2015-05-20
Type: Initial release
Version 2.0: 2023-11-15
Changes: Atomic model, Data collection, Database references, Derived calculations, Other, Refinement description, Source and taxonomy
Version 2.1: 2024-11-13
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.