The crystal structure of thiol:disulfide interchange protein DsbC from Yersinia pestis CO92
Tan, K., Zhou, M., Kwon, K., Anderson, W.F., Joachimiak, A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Protein disulfide isomerase II | 220 | Yersinia pestis CO92 | Mutation(s): 0  Gene Names: dsbC, y3275, Yersinia pestis, YPO0891, YP_3587 | ||
UniProt | |||||
Find proteins for A0A2S9PFA1 (Yersinia pestis) Explore A0A2S9PFA1  Go to UniProtKB:  A0A2S9PFA1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2S9PFA1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PO4 Query on PO4 | D [auth A], E [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Entity ID: 2 | |||||
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ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900003 Query on PRD_900003 | C | sucrose | Oligosaccharide / Nutrient |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 90.894 | α = 90 |
b = 141.335 | β = 90 |
c = 41.153 | γ = 90 |
Software Name | Purpose |
---|---|
SBC-Collect | data collection |
SHELXD | phasing |
MLPHARE | phasing |
DM | model building |
ARP | model building |
WARP | model building |
HKL-3000 | phasing |
PHENIX | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
DM | phasing |