4GTN | pdb_00004gtn

Structure of anthranilate phosphoribosyl transferase from acinetobacter baylyi

PDB DOI: https://doi.org/10.2210/pdb4GTN/pdb

Classification: TRANSFERASE
Organism(s): Acinetobacter baylyi ADP1
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2012-08-28 Released: 2013-08-28
Deposition Author(s): Ponniah, K., Nigon, L.V., Anderson, B.F., Norris, G.E., Patrick, W.M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.03 Å
R-Value Free:
0.230 (Depositor), 0.232 (DCC)
R-Value Work:
0.171 (Depositor), 0.176 (DCC)
R-Value Observed:
0.175 (Depositor)

Starting Model: experimental
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This is version 1.2 of the entry. See complete history.

Literature

Structure of anthranilate phosphoribosyl transferase from acinetobacter baylyi

Ponniah, K., Nigon, L.V., Anderson, B.F., Norris, G.E., Patrick, W.M.

To be published.

Macromolecule Content

Total Structure Weight: 37.96 kDa
Atom Count: 2,778
Modeled Residue Count: 338
Deposited Residue Count: 353
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Anthranilate phosphoribosyltransferase	A	353	Acinetobacter baylyi ADP1	Mutation(s): 0 Gene Names: trpD EC: 2.4.2.18
UniProt
Find proteins for P00500 (Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)) Explore P00500 Go to UniProtKB: P00500
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P00500
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.03 Å
R-Value Free: 0.230 (Depositor), 0.232 (DCC)
R-Value Work: 0.171 (Depositor), 0.176 (DCC)
R-Value Observed: 0.175 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 59.58	α = 90
b = 70.1	β = 90
c = 171.41	γ = 90

Software Package:

Software Name	Purpose
CrystalClear	data collection
PHASER	phasing
PHENIX	refinement
xia2	data reduction
XDS	data reduction
SCALA	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2013-08-28

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2013-08-28
Type: Initial release
Version 1.1: 2017-11-15
Changes: Refinement description
Version 1.2: 2023-11-08
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.