Structure of Type Iif Restriction Endonuclease Ngomiv with Cognate Uncleaved DNA
Manakova, E.N., Grazulis, S., Zaremba, M., Tamulaitiene, G., Golovenko, D., Siksnys, V.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
TYPE-2 RESTRICTION ENZYME NGOMIV | 286 | Neisseria gonorrhoeae | Mutation(s): 0  EC: 3.1.21.4 | ||
UniProt | |||||
Find proteins for P31032 (Neisseria gonorrhoeae) Explore P31032  Go to UniProtKB:  P31032 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P31032 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
5'-D(*TP*GP*CP*GP*CP*CP*GP*GP*CP*GP*CP)-3' | C [auth E], D [auth G] | 11 | Neisseria gonorrhoeae | ||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CA Query on CA | E [auth A], F [auth B], G [auth E] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 68.899 | α = 90 |
b = 90.081 | β = 90 |
c = 92.711 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
MOSFLM | data reduction |
SCALA | data scaling |
AMoRE | phasing |