Download MendeleyStructure of uroporphyrinogen decarboxylase from Acinetobacter baumannii
Abendroth, J., Fairman, J.W., Lorimer, D.D., Edwards, T.E.To be published.
4ZR8
Structure of uroporphyrinogen decarboxylase from Acinetobacter baumannii
- PDB DOI: https://doi.org/10.2210/pdb4ZR8/pdb
- Classification: LYASE
- Organism(s): Acinetobacter baumannii AB5075
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-05-11 Released: 2015-06-03
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.161
- R-Value Work: 0.129
- R-Value Observed: 0.131
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uroporphyrinogen decarboxylase | 365 | Acinetobacter baumannii AB5075 | Mutation(s): 0 Gene Names: hemE, A591_A1129 EC: 4.1.1.37 |  | |
UniProt | |||||
Find proteins for A0A0M3KL37 (Acinetobacter baumannii AB5075) Explore A0A0M3KL37 Go to UniProtKB: A0A0M3KL37 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0M3KL37 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | D [auth A] E [auth A] G [auth A] H [auth B] I [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| CL Query on CL | F [auth A], K [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| MG Query on MG | C [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.161
- R-Value Work: 0.129
- R-Value Observed: 0.131
- Space Group: P 1 21 1
- Diffraction Data: https://doi.org/10.18430/M34ZR8
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 65.54 | α = 90 |
| b = 83.38 | β = 106.97 |
| c = 68.46 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data scaling |
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
| ARP | model building |
| Coot | model building |
| PHENIX | refinement |
Entry History
Deposition Data
- Released Date: 2015-06-03 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2015-06-03
Type: Initial release - Version 1.1: 2017-11-22
Changes: Derived calculations, Refinement description, Source and taxonomy - Version 1.2: 2024-03-06
Changes: Data collection, Database references, Derived calculations
