4Z4A | pdb_00004z4a

Avirulence protein 4 (Avr4) from Pseudocercospora fuligena


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 
    0.210 (Depositor), 0.221 (DCC) 
  • R-Value Work: 
    0.183 (Depositor), 0.192 (DCC) 
  • R-Value Observed: 
    0.184 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 4Z4A

This is version 1.4 of the entry. See complete history

Literature

Structural Analysis of an Avr4 Effector Ortholog Offers Insight into Chitin Binding and Recognition by the Cf-4 Receptor.

Kohler, A.C.Chen, L.H.Hurlburt, N.Salvucci, A.Schwessinger, B.Fisher, A.J.Stergiopoulos, I.

(2016) Plant Cell 28: 1945-1965

  • DOI: https://doi.org/10.1105/tpc.15.00893
  • Primary Citation Related Structures: 
    4Z4A

  • PubMed Abstract: 

    Chitin is a key component of fungal cell walls and a potent inducer of innate immune responses. Consequently, fungi may secrete chitin-binding lectins, such as the Cf-Avr4 effector protein from the tomato pathogen Cladosporium fulvum, to shield chitin from host-derived chitinases during infection. Homologs of Cf-Avr4 are found throughout Dothideomycetes, and despite their modest primary sequence identity, many are perceived by the cognate tomato immune receptor Cf-4. Here, we determined the x-ray crystal structure of Pf-Avr4 from the tomato pathogen Pseudocercospora fuligena, thus providing a three-dimensional model of an Avr4 effector protein. In addition, we explored structural, biochemical, and functional aspects of Pf-Avr4 and Cf-Avr4 to further define the biology of core effector proteins and outline a conceptual framework for their pleiotropic recognition by single immune receptors. We show that Cf-Avr4 and Pf-Avr4 share functional specificity in binding (GlcNAc)6 and in providing protection against plant- and microbial-derived chitinases, suggesting a broader role beyond deregulation of host immunity. Furthermore, structure-guided site-directed mutagenesis indicated that residues in Pf-Avr4 important for binding chitin do not directly influence recognition by Cf-4 and further suggested that the property of recognition is structurally separated or does not fully overlap with the virulence function of the effector.


  • Organizational Affiliation
    • Department of Plant Pathology, University of California Davis, Davis, California 95616.

Macromolecule Content 

  • Total Structure Weight: 27.77 kDa 
  • Atom Count: 1,355 
  • Modeled Residue Count: 149 
  • Deposited Residue Count: 242 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Carbohydrate-binding module family 14 protein
A, B
121Pseudocercospora fuligenaMutation(s): 0 
UniProt
Find proteins for M3AZE0 (Pseudocercospora fijiensis (strain CIRAD86))
Explore M3AZE0 
Go to UniProtKB:  M3AZE0
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupM3AZE0
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
EDO

Query on EDO



Download:Ideal Coordinates CCD File
C [auth A]
D [auth A]
E [auth A]
F [auth A]
G [auth A]
C [auth A],
D [auth A],
E [auth A],
F [auth A],
G [auth A],
H [auth A],
I [auth A],
J [auth A],
K [auth B],
L [auth B],
M [auth B],
N [auth B],
O [auth B],
P [auth B],
Q [auth B],
R [auth B]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free:  0.210 (Depositor), 0.221 (DCC) 
  • R-Value Work:  0.183 (Depositor), 0.192 (DCC) 
  • R-Value Observed: 0.184 (Depositor) 
Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 57.1α = 90
b = 57.1β = 90
c = 126.98γ = 120
Software Package:
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
PHENIXphasing
REFMACrefinement

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
University of CaliforniaUnited StatesRI-091

Revision History  (Full details and data files)

  • Version 1.0: 2016-06-29
    Type: Initial release
  • Version 1.1: 2016-07-13
    Changes: Source and taxonomy
  • Version 1.2: 2016-07-27
    Changes: Database references
  • Version 1.3: 2016-09-14
    Changes: Database references
  • Version 1.4: 2024-11-13
    Changes: Data collection, Database references, Derived calculations, Structure summary