Characterization of a GH7 Family Cellobiohydrolase from Daphnia pulex
Hobdey, S.E., Ebrahim, A., Podkaminer, K., Taylor II, L.E., Beckham, G.T., Decker, S.R., Himmel, M.E., Cragg, S.M., McGeehan, J.E.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cellobiohydrolase CHBI | 445 | Daphnia pulex | Mutation(s): 0  Gene Names: CEL7A, DAPPUDRAFT_347598 EC: 3.2.1.91 | ||
UniProt | |||||
Find proteins for E9G5J5 (Daphnia pulex) Explore E9G5J5  Go to UniProtKB:  E9G5J5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | E9G5J5 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GOL Query on GOL | C [auth A], D [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
PCA Query on PCA | A, B | L-PEPTIDE LINKING | C5 H7 N O3 | GLN |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 128.29 | α = 90 |
b = 47.02 | β = 108.23 |
c = 173.5 | γ = 90 |
Software Name | Purpose |
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XDS | data reduction |
XSCALE | data scaling |
PHASER | phasing |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
Funding Organization | Location | Grant Number |
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Biotechnology and Biological Sciences Research Council | United Kingdom | BB/L001926/1 |
Department of Energy (DOE, United States) | United States | -- |