Download MendeleyStructure of phage c-st truncated TubZ at 2.4 Angstroms resolution
Oliva, M.A.To be published.
4XCQ
Clostridium botulinum phage c-st TubZ (C-terminal tail truncated protein)
- PDB DOI: https://doi.org/10.2210/pdb4XCQ/pdb
- Classification: HYDROLASE
- Organism(s): Clostridium phage c-st
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2014-12-18 Released: 2016-03-09
- Funding Organization(s): Spanish Ministry of Economy and Competitiveness
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.39 Å
- R-Value Free: 0.239
- R-Value Work: 0.196
- R-Value Observed: 0.198
Starting Model: experimental
View more details
This is version 2.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| TubZ | 318 | Clostridium phage c-st | Mutation(s): 0 Gene Names: CST189 EC: 3.6.5 |  | |
UniProt | |||||
Find proteins for Q331T7 (Clostridium botulinum C phage) Explore Q331T7 Go to UniProtKB: Q331T7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q331T7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GDP Query on GDP | B [auth A] | GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N |  | ||
| NA Query on NA | C [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.39 Å
- R-Value Free: 0.239
- R-Value Work: 0.196
- R-Value Observed: 0.198
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 104.97 | α = 90 |
| b = 86.342 | β = 92.49 |
| c = 44.734 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2016-03-09 Deposition Author(s): Oliva, M.A.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Spanish Ministry of Economy and Competitiveness | Spain | BFU2013-47014-P |
Revision History (Full details and data files)
- Version 1.0: 2016-03-09
Type: Initial release - Version 1.1: 2016-07-13
Changes: Data collection - Version 1.2: 2016-12-14
Changes: Other - Version 2.0: 2017-09-13
Changes: Advisory, Atomic model, Author supporting evidence, Derived calculations - Version 2.1: 2024-01-10
Changes: Data collection, Database references, Refinement description
