4X54 | pdb_00004x54

Crystal structure of an oxidoreductase (short chain dehydrogenase/reductase) from Brucella ovis

• PDB DOI: https://doi.org/10.2210/pdb4X54/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Brucella ovis ATCC 25840
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2014-12-04 Released: 2015-02-25 
• Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.45 Å
• R-Value Free: 
  0.173 (Depositor), 0.173 (DCC) 
• R-Value Work: 
  0.155 (Depositor), 0.155 (DCC) 
• R-Value Observed: 
  0.156 (Depositor) 

Literature

Crystal structure of an oxidoreductase/ short chain dehydrogenase from Brucella ovis

Lukacs, C.M., Edwards, T.E., Lorimer, D.D.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 30.13 kDa 
• Atom Count: 1,828 
• Modeled Residue Count: 214 
• Deposited Residue Count: 276 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Oxidoreductase, short chain dehydrogenase/reductase family	A	276	Brucella ovis ATCC 25840	Mutation(s): 0  Gene Names: BOV_0113
UniProt
Find proteins for A0A0H3AQ75 (Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512)) Explore A0A0H3AQ75  Go to UniProtKB:  A0A0H3AQ75

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MPD	B [auth A], C [auth A]	(4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.45 Å
• R-Value Free:  0.173 (Depositor), 0.173 (DCC) 
• R-Value Work:  0.155 (Depositor), 0.155 (DCC) 
• R-Value Observed: 0.156 (Depositor) 

Diffraction Data: https://doi.org/10.18430/M34X54

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.19	α = 90
b = 100.88	β = 90
c = 101.41	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-02-25 
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History  

• Version 1.0: 2015-02-25
  Type: Initial release
  
• Version 1.1: 2024-02-28
  Changes: Data collection, Database references, Derived calculations, Source and taxonomy, Structure summary