4X2H | pdb_00004x2h

Sac3N peptide bound to Mex67:Mtr2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 
    0.187 (Depositor), 0.190 (DCC) 
  • R-Value Work: 
    0.164 (Depositor), 0.169 (DCC) 
  • R-Value Observed: 
    0.165 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 4X2H

This is version 1.2 of the entry. See complete history

Literature

Structural Characterization of the Chaetomium thermophilum TREX-2 Complex and its Interaction with the mRNA Nuclear Export Factor Mex67:Mtr2.

Dimitrova, L.Valkov, E.Aibara, S.Flemming, D.McLaughlin, S.H.Hurt, E.Stewart, M.

(2015) Structure 23: 1246-1257

  • DOI: https://doi.org/10.1016/j.str.2015.05.002
  • Primary Citation Related Structures: 
    4WPX, 4X2H, 4X2O

  • PubMed Abstract: 

    The TREX-2 complex integrates mRNA nuclear export into the gene expression pathway and is based on a Sac3 scaffold to which Thp1, Sem1, Sus1, and Cdc31 bind. TREX-2 also binds the mRNA nuclear export factor, Mex67:Mtr2, through the Sac3 N-terminal region (Sac3N). Here, we characterize Chaetomium thermophilum TREX-2, show that the in vitro reconstituted complex has an annular structure, and define the structural basis for interactions between Sac3, Sus1, Cdc31, and Mex67:Mtr2. Crystal structures show that the binding of C. thermophilum Sac3N to the Mex67 NTF2-like domain (Mex67(NTF2L)) is mediated primarily through phenylalanine residues present in a series of repeating sequence motifs that resemble those seen in many nucleoporins, and Mlp1 also binds Mex67:Mtr2 using a similar motif. Deletion of Sac3N generated growth and mRNA export defects in Saccharomyces cerevisiae, and we propose TREX-2 and Mlp1 function to facilitate export by concentrating mature messenger ribonucleoparticles at the nuclear pore entrance.


  • Organizational Affiliation
    • Medical Research Council Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge Biomedical Campus, Cambridge CB2 0QH, UK; Biochemie-Zentrum der Universität Heidelberg, INF328, 69120 Heidelberg, Germany.

Macromolecule Content 

  • Total Structure Weight: 44.61 kDa 
  • Atom Count: 3,294 
  • Modeled Residue Count: 373 
  • Deposited Residue Count: 396 
  • Unique protein chains: 3

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Putative mRNA export protein193Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Gene Names: CTHT_0059630
UniProt
Find proteins for G0SET4 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0SET4 
Go to UniProtKB:  G0SET4
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0SET4
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Putative uncharacterized protein183Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Gene Names: CTHT_0065500
UniProt
Find proteins for G0SG92 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0SG92 
Go to UniProtKB:  G0SG92
Entity Groups
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UniProt GroupG0SG92
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Reference Sequence
Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
SER-SER-VAL-PHE-GLY-ALA-PRO-ALA20Thermochaetoides thermophilaMutation(s): 0 
UniProt
Find proteins for G0SGL4 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0SGL4 
Go to UniProtKB:  G0SGL4
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0SGL4
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free:  0.187 (Depositor), 0.190 (DCC) 
  • R-Value Work:  0.164 (Depositor), 0.169 (DCC) 
  • R-Value Observed: 0.165 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 53.019α = 90
b = 74.195β = 112.87
c = 54.816γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-06-17
    Type: Initial release
  • Version 1.1: 2015-07-15
    Changes: Database references
  • Version 1.2: 2024-05-08
    Changes: Data collection, Database references