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 4WV4 | pdb_00004wv4

Heterodimer of TAF8/TAF10


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.91 Å
  • R-Value Free: 
    0.237 (Depositor), 0.241 (DCC) 
  • R-Value Work: 
    0.205 (Depositor), 0.215 (DCC) 
  • R-Value Observed: 
    0.206 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 4WV4

This is version 1.1 of the entry. See complete history. 

Literature

Cytoplasmic TAF2-TAF8-TAF10 complex provides evidence for nuclear holo-TFIID assembly from preformed submodules.

Trowitzsch, S., Viola, C., Scheer, E., Conic, S., Chavant, V., Fournier, M., Papai, G., Ebong, I.O., Schaffitzel, C., Zou, J., Haffke, M., Rappsilber, J., Robinson, C.V., Schultz, P., Tora, L., Berger, I.

(2015) Nat Commun 6: 6011-6011

  • DOI: https://doi.org/10.1038/ncomms7011
  • Primary Citation Related Structures: 
    4WV4, 4WV6

  • PubMed Abstract: 

    General transcription factor TFIID is a cornerstone of RNA polymerase II transcription initiation in eukaryotic cells. How human TFIID-a megadalton-sized multiprotein complex composed of the TATA-binding protein (TBP) and 13 TBP-associated factors (TAFs)-assembles into a functional transcription factor is poorly understood. Here we describe a heterotrimeric TFIID subcomplex consisting of the TAF2, TAF8 and TAF10 proteins, which assembles in the cytoplasm. Using native mass spectrometry, we define the interactions between the TAFs and uncover a central role for TAF8 in nucleating the complex. X-ray crystallography reveals a non-canonical arrangement of the TAF8-TAF10 histone fold domains. TAF2 binds to multiple motifs within the TAF8 C-terminal region, and these interactions dictate TAF2 incorporation into a core-TFIID complex that exists in the nucleus. Our results provide evidence for a stepwise assembly pathway of nuclear holo-TFIID, regulated by nuclear import of preformed cytoplasmic submodules.


  • Organizational Affiliation: 
    • 1] European Molecular Biology Laboratory, Grenoble Outstation, 6 rue Jules Horowitz, 38042 Grenoble, France [2] Unit for Virus Host-Cell Interactions, University Grenoble Alpes-EMBL-CNRS, 6 rue Jules Horowitz, 38042 Grenoble, France.

Macromolecule Content 

  • Total Structure Weight: 22.17 kDa 
  • Atom Count: 1,474 
  • Modeled Residue Count: 179 
  • Deposited Residue Count: 199 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Transcription initiation factor TFIID subunit 10102Homo sapiensMutation(s): 0 
Gene Names: TAF10, TAF2A, TAF2H, TAFII30
UniProt & NIH Common Fund Data Resources
Find proteins for Q12962 (Homo sapiens)
Explore Q12962 
Go to UniProtKB:  Q12962
PHAROS:  Q12962
GTEx:  ENSG00000166337 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12962
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Transcription initiation factor TFIID subunit 897Homo sapiensMutation(s): 0 
Gene Names: TAF8, TAFII43, TBN
UniProt & NIH Common Fund Data Resources
Find proteins for Q7Z7C8 (Homo sapiens)
Explore Q7Z7C8 
Go to UniProtKB:  Q7Z7C8
PHAROS:  Q7Z7C8
GTEx:  ENSG00000137413 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7Z7C8
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.91 Å
  • R-Value Free:  0.237 (Depositor), 0.241 (DCC) 
  • R-Value Work:  0.205 (Depositor), 0.215 (DCC) 
  • R-Value Observed: 0.206 (Depositor) 
Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 51.32α = 90
b = 51.32β = 90
c = 144.4γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing
Cootmodel building

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Commission (EC) Research Executive Agency (REA)France254671

Revision History  (Full details and data files)

  • Version 1.0: 2015-01-28
    Type: Initial release
  • Version 1.1: 2024-05-08
    Changes: Data collection, Database references