Applying Fragments Based- Drug Design to identify multiple binding modes on cysteine protease.
Tochowicz, A., Lee, G.M., Arkin, M.R., Neitz, J., McKerrow, J., Craik, C.S.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cruzipain | 216 | Trypanosoma cruzi | Mutation(s): 1  EC: 3.4.22.51 | ||
UniProt | |||||
Find proteins for P25779 (Trypanosoma cruzi) Explore P25779  Go to UniProtKB:  P25779 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P25779 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
3H6 Query on 3H6 | G [auth A] | N-(1H-benzimidazol-2-yl)-3-(4-fluorophenyl)-1H-pyrazole-4-carboxamide C17 H12 F N5 O NATFUWRFXYXTFK-UHFFFAOYSA-N | |||
3H5 Query on 3H5 | F [auth A], J [auth C] | N-(1H-benzimidazol-2-yl)-1,3-dimethyl-1H-pyrazole-4-carboxamide C13 H13 N5 O ATWRDFSNOOXDOA-UHFFFAOYSA-N | |||
3H7 Query on 3H7 | H [auth B], I [auth C], K [auth D] | 4,6-difluoro-1,3-benzothiazol-2-amine C7 H4 F2 N2 S DDKKXSCVPKDRRS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 137.79 | α = 90 |
b = 137.79 | β = 90 |
c = 166.48 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
MOSFLM | data reduction |
XSCALE | data scaling |
XDS | data reduction |
SCALA | data scaling |