4V20 | pdb_00004v20

The 3-D structure of the cellobiohydrolase, Cel7A, from Aspergillus fumigatus, disaccharide complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 
    0.158 (Depositor), 0.170 (DCC) 
  • R-Value Work: 
    0.132 (Depositor), 0.140 (DCC) 
  • R-Value Observed: 
    0.133 (Depositor) 

Starting Model: experimental
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Ligand Structure Quality Assessment 

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This is version 3.2 of the entry. See complete history


Literature

The Three-Dimensional Structure of the Cellobiohydrolase Cel7A from Aspergillus Fumigatus at 1.5 A Resolution

Moroz, O.V.Maranta, M.Shaghasi, T.Harris, P.V.Wilson, K.S.Davies, G.J.

(2015) Acta Crystallogr Sect F Struct Biol Cryst Commun 71: 114

  • DOI: https://doi.org/10.1107/S2053230X14027307
  • Primary Citation of Related Structures:  
    4V1Z, 4V20

  • PubMed Abstract: 

    The enzymatic degradation of plant cell-wall cellulose is central to many industrial processes, including second-generation biofuel production. Key players in this deconstruction are the fungal cellobiohydrolases (CBHs), notably those from family GH7 of the carbohydrate-active enzymes (CAZY) database, which are generally known as CBHI enzymes. Here, three-dimensional structures are reported of the Aspergillus fumigatus CBHI Cel7A solved in uncomplexed and disaccharide-bound forms at resolutions of 1.8 and 1.5 Å, respectively. The product complex with a disaccharide in the +1 and +2 subsites adds to the growing three-dimensional insight into this family of industrially relevant biocatalysts.


  • Organizational Affiliation

    Department of Chemistry, University of York, York Structural Biology Laboratory, York YO10 5DD, England.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
CELLOBIOHYDROLASE440Aspergillus fumigatusMutation(s): 0 
EC: 3.2.1.91
UniProt
Find proteins for Q4WM08 (Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293))
Explore Q4WM08 
Go to UniProtKB:  Q4WM08
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ4WM08
Glycosylation
Glycosylation Sites: 1
Sequence Annotations
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  • Reference Sequence
Oligosaccharides

Help

Entity ID: 2
MoleculeChains Length2D Diagram Glycosylation3D Interactions
beta-D-glucopyranose-(1-4)-2-deoxy-2-fluoro-beta-D-glucopyranose
B
2N/A
Glycosylation Resources
GlyTouCan:  G28308WE
GlyCosmos:  G28308WE
Biologically Interesting Molecules (External Reference) 1 Unique
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free:  0.158 (Depositor), 0.170 (DCC) 
  • R-Value Work:  0.132 (Depositor), 0.140 (DCC) 
  • R-Value Observed: 0.133 (Depositor) 
Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 79.56α = 90
b = 130.78β = 90
c = 46.12γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted NAGClick on this verticalbar to view details

Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-01-14
    Type: Initial release
  • Version 1.1: 2015-02-04
    Changes: Database references
  • Version 1.2: 2015-02-18
    Changes: Data collection
  • Version 2.0: 2020-03-11
    Changes: Data collection, Derived calculations, Other, Polymer sequence
  • Version 3.0: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary
  • Version 3.1: 2024-01-10
    Changes: Data collection, Database references, Refinement description, Structure summary
  • Version 3.2: 2024-10-23
    Changes: Structure summary