4UYS | pdb_00004uys

X-ray structure of the N-terminal domain of the flocculin Flo11 from Saccharomyces cerevisiae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.05 Å
  • R-Value Free: 
    0.170 (Depositor), 0.174 (DCC) 
  • R-Value Work: 
    0.147 (Depositor), 0.154 (DCC) 
  • R-Value Observed: 
    0.147 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 4UYS

This is version 1.1 of the entry. See complete history

Literature

Interactions by the Fungal Flo11 Adhesin Depend on a Fibronectin Type III-Like Adhesin Domain Girdled by Aromatic Bands.

Kraushaar, T.Bruckner, S.Veelders, M.Rhinow, D.Schreiner, F.Birke, R.Pagenstecher, A.Mosch, H.Essen, L.

(2015) Structure 23: 1005

  • DOI: https://doi.org/10.1016/j.str.2015.03.021
  • Primary Citation Related Structures: 
    4UYR, 4UYS, 4UYT

  • PubMed Abstract: 

    Saccharomyces cerevisiae harbors a family of GPI-anchored cell wall proteins for interaction with its environment. The flocculin Flo11, a major representative of these fungal adhesins, confers formation of different types of multicellular structures such as biofilms, flors, or filaments. To understand these environment-dependent growth phenotypes on a molecular level, we solved the crystal structure of the N-terminal Flo11A domain at 0.89-Å resolution. Besides a hydrophobic apical region, the Flo11A domain consists of a β sandwich of the fibronectin type III domain (FN3). We further show that homophilic Flo11-Flo11 interactions and heterophilic Flo11-plastic interactions solely depend on the Flo11A domain and are strongly pH dependent. These functions of Flo11A involve an apical region with its surface-exposed aromatic band, which is accompanied by acidic stretches. Together with electron microscopic reconstructions of yeast cell-cell contact sites, our data suggest that Flo11 acts as a spacer-like, pH-sensitive adhesin that resembles a membrane-tethered hydrophobin.


  • Organizational Affiliation
    • Department of Chemistry, Philipps-Universität, Hans-Meerwein-Straße 4, 35032 Marburg, Germany; Department of Biology, Philipps-Universität, Karl-von-Frisch-Straße 8, 35043 Marburg, Germany.

Macromolecule Content 

  • Total Structure Weight: 20.75 kDa 
  • Atom Count: 1,774 
  • Modeled Residue Count: 178 
  • Deposited Residue Count: 182 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
FLOCCULATION PROTEIN FLO11182Saccharomyces cerevisiae S288CMutation(s): 0 
UniProt
Find proteins for P08640 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P08640 
Go to UniProtKB:  P08640
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08640
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
MG

Query on MG



Download:Ideal Coordinates CCD File
I [auth A]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
NA

Query on NA



Download:Ideal Coordinates CCD File
B [auth A]
C [auth A]
D [auth A]
E [auth A]
F [auth A]
B [auth A],
C [auth A],
D [auth A],
E [auth A],
F [auth A],
G [auth A],
H [auth A]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.05 Å
  • R-Value Free:  0.170 (Depositor), 0.174 (DCC) 
  • R-Value Work:  0.147 (Depositor), 0.154 (DCC) 
  • R-Value Observed: 0.147 (Depositor) 
Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 52.72α = 90
b = 101.55β = 90
c = 33.87γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-08-12
    Type: Initial release
  • Version 1.1: 2024-11-20
    Changes: Data collection, Database references, Derived calculations, Other, Structure summary