4U4P | pdb_00004u4p

Crystal structure of the human condensin SMC hinge domain heterodimer with short coiled coils

PDB DOI: https://doi.org/10.2210/pdb4U4P/pdb

Classification: PROTEIN BINDING
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2014-07-24 Released: 2015-08-26
Deposition Author(s): Uchiyama, S., Kawahara, K., Hosokawa, Y., Fukakusa, S., Oki, H., Nakamura, S., Noda, M., Takino, R., Miyahara, Y., Maruno, T., Kobayashi, Y., Ohkubo, T., Fukui, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.89 Å
R-Value Free:
0.235 (Depositor), 0.234 (DCC)
R-Value Work:
0.188 (Depositor), 0.190 (DCC)
R-Value Observed:
0.190 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Structural basis for dimer information and DNA recognition of human SMC proteins

Uchiyama, S., Kawahara, K., Hosokawa, Y., Fukakusa, S., Oki, H., Nakamura, S., Noda, M., Takino, R., Miyahara, Y., Maruno, T., Kobayashi, Y., Ohkubo, T., Fukui, K.

To be published.

Macromolecule Content

Total Structure Weight: 54.18 kDa
Atom Count: 3,675
Modeled Residue Count: 428
Deposited Residue Count: 480
Unique protein chains: 2

Macromolecules

Find similar proteins by:

| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Structural maintenance of chromosomes protein 2	A	233	Homo sapiens	Mutation(s): 0 Gene Names: SMC2, CAPE, SMC2L1, PRO0324
UniProt & NIH Common Fund Data Resources
Find proteins for O95347 (Homo sapiens) Explore O95347 Go to UniProtKB: O95347
PHAROS: O95347 GTEx: ENSG00000136824
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O95347
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Structural maintenance of chromosomes protein 4	B	247	Homo sapiens	Mutation(s): 0 Gene Names: SMC4, CAPC, SMC4L1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NTJ3 (Homo sapiens) Explore Q9NTJ3 Go to UniProtKB: Q9NTJ3
PHAROS: Q9NTJ3 GTEx: ENSG00000113810
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9NTJ3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.89 Å
R-Value Free: 0.235 (Depositor), 0.234 (DCC)
R-Value Work: 0.188 (Depositor), 0.190 (DCC)
R-Value Observed: 0.190 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.4	α = 90
b = 93.98	β = 90
c = 102.07	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2015-08-26

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2015-08-26
Type: Initial release
Version 1.1: 2020-01-29
Changes: Data collection, Derived calculations
Version 1.2: 2023-11-08
Changes: Data collection, Database references, Refinement description