4TSA | pdb_00004tsa

Structure of a lysozyme FAb complex

PDB DOI: https://doi.org/10.2210/pdb4TSA/pdb

Classification: Immune System/hydrolase
Organism(s): Gallus gallus, Homo sapiens
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2014-06-18 Released: 2015-07-08
Deposition Author(s): Wensley, B.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.27 Å
R-Value Free:
0.310 (Depositor), 0.330 (DCC)
R-Value Work:
0.281 (Depositor), 0.296 (DCC)
R-Value Observed:
0.282 (Depositor)

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This is version 1.1 of the entry. See complete history.

Literature

Structure of a lysozyme FAb complex

Wensley, B.

To be published.

Macromolecule Content

Total Structure Weight: 60.53 kDa
Atom Count: 3,676
Modeled Residue Count: 486
Deposited Residue Count: 568
Unique protein chains: 3

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lysozyme C	A	129	Gallus gallus	Mutation(s): 0 EC: 3.2.1.17
UniProt
Find proteins for P00698 (Gallus gallus) Explore P00698 Go to UniProtKB: P00698
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P00698
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
FAb Heavy Chain	B [auth H]	222	Homo sapiens	Mutation(s): 0

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
FAb Light Chain	C [auth L]	217	Homo sapiens	Mutation(s): 0

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.27 Å
R-Value Free: 0.310 (Depositor), 0.330 (DCC)
R-Value Work: 0.281 (Depositor), 0.296 (DCC)
R-Value Observed: 0.282 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 44.74	α = 90
b = 97.57	β = 93.61
c = 57.85	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
XDS	data reduction
Aimless	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2015-07-08

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2015-07-08
Type: Initial release
Version 1.1: 2024-10-23
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.