4S0M

Crystal Structure of nucleoside diphosphate kinase at 1.92 A resolution from acinetobacter baumannii


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.92 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.211 
  • R-Value Observed: 0.213 

Starting Model: experimental
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This is version 1.1 of the entry. See complete history


Literature

Crystal Structure of nucleoside diphosphate kinase at 1.92 A resolution from Acinetobacter baumannii

Sikarwar, J.Shukla, P.K.Kaur, P.Sharma, S.Singh, T.P.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Nucleoside diphosphate kinase143Acinetobacter baumanniiMutation(s): 0 
Gene Names: ABBL099_02780BL01_17035FL75_03050FL80_07750GQ86_04945IOMTU433_3298IX87_17090LX00_02580ndkP795_14800
EC: 2.7.4.6
UniProt
Find proteins for V5VIC4 (Acinetobacter baumannii)
Explore V5VIC4 
Go to UniProtKB:  V5VIC4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupV5VIC4
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.92 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.211 
  • R-Value Observed: 0.213 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 68.924α = 90
b = 71.381β = 93.71
c = 129.427γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
AMoREphasing
PHENIXrefinement
HKL-2000data reduction
SCALEPACKdata scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-02-11
    Type: Initial release
  • Version 1.1: 2023-09-20
    Changes: Data collection, Database references, Derived calculations, Refinement description