4RLH | pdb_00004rlh

Crystal structure of enoyl ACP reductase from Burkholderia pseudomallei in complex with AFN-1252

• PDB DOI: https://doi.org/10.2210/pdb4RLH/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Burkholderia pseudomallei K96243
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2014-10-17 Released: 2015-12-09 
• Deposition Author(s): Rao, K.N., Sarah, J., Anirudha, L., Subramanya, H.S.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.26 Å
• R-Value Free: 
  0.250 (Depositor), 0.244 (DCC) 
• R-Value Work: 
  0.167 (Depositor), 0.177 (DCC) 
• R-Value Observed: 
  0.171 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of enoyl ACP reductase from Burkholderia pseudomallei in complex with AFN-1252

Rao, N.K., Sarah, J., Anirudha, L., Subramanya, H.S.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 117.38 kDa 
• Atom Count: 8,214 
• Modeled Residue Count: 1,022 
• Deposited Residue Count: 1,088 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Enoyl-[acyl-carrier-protein] reductase [NADH]	A, B, C [auth D], D [auth C]	272	Burkholderia pseudomallei K96243	Mutation(s): 0  Gene Names: fabI, BPSL2204 EC: 1.3.1.9
UniProt
Find proteins for Q63SW7 (Burkholderia pseudomallei (strain K96243)) Explore Q63SW7  Go to UniProtKB:  Q63SW7

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
0WE	E [auth A], F [auth B], G [auth D], H [auth C]	N-methyl-N-[(3-methyl-1-benzofuran-2-yl)methyl]-3-(7-oxo-5,6,7,8-tetrahydro-1,8-naphthyridin-3-yl)propanamide C22 H23 N3 O3 WDNCPCMRTFYNIQ-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.26 Å
• R-Value Free:  0.250 (Depositor), 0.244 (DCC) 
• R-Value Work:  0.167 (Depositor), 0.177 (DCC) 
• R-Value Observed: 0.171 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 134.795	α = 90
b = 63.445	β = 107.08
c = 121.848	γ = 90

Software Package:

Software Name	Purpose
CrystalClear	data collection
MOLREP	phasing
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-12-09 
Deposition Author(s): Rao, K.N., Sarah, J., Anirudha, L., Subramanya, H.S.

Revision History  

• Version 1.0: 2015-12-09
  Type: Initial release
  
• Version 1.1: 2023-09-20
  Changes: Data collection, Database references, Derived calculations, Refinement description