4QLH | pdb_00004qlh

Crystal structure of drug resistant V82S/V1082S HIV-1 Protease

PDB DOI: https://doi.org/10.2210/pdb4QLH/pdb

Classification: HYDROLASE
Organism(s): Human immunodeficiency virus 1, synthetic construct
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2014-06-12 Released: 2014-08-06
Deposition Author(s): Das, A., Raskar, T., Hosur, M.V.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free:
0.256 (Depositor), 0.267 (DCC)
R-Value Work:
0.192 (Depositor), 0.198 (DCC)
R-Value Observed:
0.195 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of drug resistant V82S/V1082S HIV-1 Protease

Hosur, M.V.

To be published.

Macromolecule Content

Total Structure Weight: 21.82 kDa
Atom Count: 1,566
Modeled Residue Count: 198
Deposited Residue Count: 203
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protease, linker, Protease	A	203	Human immunodeficiency virus 1, synthetic construct	Mutation(s): 4 Gene Names: pol EC: 3.4.23.16
UniProt
Find proteins for P04585 (Human immunodeficiency virus type 1 group M subtype B (isolate HXB2)) Explore P04585 Go to UniProtKB: P04585
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P04585
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free: 0.256 (Depositor), 0.267 (DCC)
R-Value Work: 0.192 (Depositor), 0.198 (DCC)
R-Value Observed: 0.195 (Depositor)

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 62.49	α = 90
b = 62.49	β = 90
c = 83.44	γ = 120

Software Package:

Software Name	Purpose
MAR345dtb	data collection
PHASER	phasing
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2014-08-06

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2014-08-06
Type: Initial release
Version 1.1: 2014-08-13
Changes: Other
Version 1.2: 2017-06-21
Changes: Database references, Source and taxonomy, Structure summary
Version 1.3: 2023-11-08
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.