4QGL | pdb_00004qgl

Acireductone dioxygenase from Bacillus anthracis with three cadmium ions

• PDB DOI: https://doi.org/10.2210/pdb4QGL/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Bacillus anthracis str. 'Ames Ancestor
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2014-05-23 Released: 2014-06-18 
• Deposition Author(s): Milaczewska, A.M., Chruszcz, M., Majorek, K.A., Porebski, P.J., Borowski, T., Anderson, W.F., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.61 Å
• R-Value Free: 
  0.226 (Depositor), 0.216 (DCC) 
• R-Value Work: 
  0.176 (Depositor), 0.167 (DCC) 
• R-Value Observed: 
  0.178 (Depositor) 

Starting Model: experimental

Literature

Acireductone dioxygenase from Bacillus anthracis with three cadmium ions

Milaczewska, A.M., Chruszcz, M., Majorek, K.A., Porebski, P.J., Borowski, T., Minor, W.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 20.18 kDa 
• Atom Count: 1,434 
• Modeled Residue Count: 174 
• Deposited Residue Count: 174 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acireductone dioxygenase	A	174	Bacillus anthracis str. 'Ames Ancestor	Mutation(s): 0  Gene Names: BAS3949, BA_4258, GBAA4258, GBAA_4258, mtnD EC: 1.13.11.54 (PDB Primary Data), 1.13.11.53 (PDB Primary Data)
UniProt
Find proteins for Q81MI9 (Bacillus anthracis) Explore Q81MI9  Go to UniProtKB:  Q81MI9

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CD	B [auth A], C [auth A], D [auth A]	CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.61 Å
• R-Value Free:  0.226 (Depositor), 0.216 (DCC) 
• R-Value Work:  0.176 (Depositor), 0.167 (DCC) 
• R-Value Observed: 0.178 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 106.761	α = 90
b = 57.69	β = 98.15
c = 33.98	γ = 90

Software Package:

Software Name	Purpose
HKL-3000	phasing
MOLREP	phasing
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-06-18 
Deposition Author(s): Milaczewska, A.M., Chruszcz, M., Majorek, K.A., Porebski, P.J., Borowski, T., Anderson, W.F., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History  

• Version 1.0: 2014-06-18
  Type: Initial release
  
• Version 1.1: 2017-02-08
  Changes: Structure summary
• Version 1.2: 2017-11-22
  Changes: Refinement description
• Version 1.3: 2022-04-13
  Changes: Database references, Derived calculations, Structure summary
• Version 1.4: 2023-09-20
  Changes: Data collection, Refinement description