Crystal structure of Vaccinia virus uracil-DNA glycosylase mutant 3GD4
Sartmatova, D., Nash, T., Schormann, N., Nuth, M., Ricciardi, R., Banerjee, S., Chattopadhyay, D.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Uracil-DNA glycosylase | A, B [auth C], C [auth D], D [auth B] | 221 | Vaccinia virus Ankara | Mutation(s): 4  Gene Names: ACAM3000_MVA_101, D4, MVA101R, UNG EC: 3.2.2.27 | ![]() |
UniProt | |||||
Find proteins for P04303 (Vaccinia virus (strain Western Reserve)) Explore P04303  Go to UniProtKB:  P04303 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04303 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | E [auth A], J [auth C], M [auth D], N [auth B], O [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
EDO Query on EDO | F [auth A] G [auth A] H [auth A] I [auth A] K [auth C] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 93.378 | α = 90 |
b = 93.378 | β = 90 |
c = 285.182 | γ = 120 |
Software Name | Purpose |
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PHENIX | refinement |
PDB_EXTRACT | data extraction |
RAPD | data collection |
XDS | data reduction |
SCALA | data scaling |
PHASER | phasing |
REFMAC | refinement |