Understanding PDZ Affinity and Selectivity: All Residues Considered
Amacher, J.F.(2014) Thesis 
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome c iso-1 | 106 | Saccharomyces cerevisiae | Mutation(s): 3  Gene Names: CYC1, YJR048W, J1653 | ||
UniProt | |||||
Find proteins for P00044 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P00044  Go to UniProtKB:  P00044 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00044 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
HEM Query on HEM | D [auth A], E [auth B], F [auth C] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 105.96 | α = 90 |
b = 105.96 | β = 90 |
c = 149.95 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
PHENIX | model building |
PHENIX | refinement |
XDS | data reduction |
XSCALE | data scaling |
PHENIX | phasing |
Blu-Ice | data collection |