4Q5N | pdb_00004q5n

Crystal structure of the gluthatione S-transferase Blo t 8

PDB DOI: https://doi.org/10.2210/pdb4Q5N/pdb

Classification: TRANSFERASE
Organism(s): Blomia tropicalis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2014-04-17 Released: 2015-04-01
Deposition Author(s): Pedersen, L.C., Mueller, G.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.55 Å
R-Value Free:
0.283 (Depositor), 0.282 (DCC)
R-Value Work:
0.224 (Depositor), 0.223 (DCC)
R-Value Observed:
0.227 (Depositor)

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Ligand Structure Quality Assessment

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Literature

Crystal structure of the gluthatione S-transferase Blo t 8

Pedersen, L.C., Mueller, G.A.

To be published.

Macromolecule Content

Total Structure Weight: 56.46 kDa
Atom Count: 3,771
Modeled Residue Count: 438
Deposited Residue Count: 472
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gluthatione S-transferase Blo t 8 isoform	A, B	236	Blomia tropicalis	Mutation(s): 0 EC: 2.5.1.18
UniProt
Find proteins for C8CGT7 (Blomia tropicalis) Explore C8CGT7 Go to UniProtKB: C8CGT7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	C8CGT7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GSH Query on GSH Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth A] SDF format, chain E [auth B] SDF format, chain F [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth A] MOL2 format, chain E [auth B] MOL2 format, chain F [auth B] mmCIF format, chain C [auth A] mmCIF format, chain D [auth A] mmCIF format, chain E [auth B] mmCIF format, chain F [auth B]	C [auth A], D [auth A], E [auth B], F [auth B]	Glutathione C₁₀ H₁₇ N₃ O₆ S RWSXRVCMGQZWBV-WDSKDSINSA-N		Interactions Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth B] Focus chain F [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth B] Focus chain F [auth B]

Biologically Interesting Molecules (External Reference)

1 Unique

Entity ID: 2
ID	Chains	Name	Type/Class	2D Diagram	3D Interactions
PRD_002593 (GSH) Query on PRD_002593	C [auth A], D [auth A], E [auth B], F [auth B]	Glutathione	Peptide-like / Oxidation-reduction		Interactions Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth B] Focus chain F [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth B] Focus chain F [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.55 Å
R-Value Free: 0.283 (Depositor), 0.282 (DCC)
R-Value Work: 0.224 (Depositor), 0.223 (DCC)
R-Value Observed: 0.227 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.55	α = 90
b = 80.272	β = 90
c = 126.189	γ = 90

Software Package:

Software Name	Purpose
StructureStudio	data collection
MLPHARE	phasing
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2015-04-01

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2015-04-01
Type: Initial release
Version 1.1: 2024-02-28
Changes: Data collection, Database references, Derived calculations

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.