Crystal structure of peptidoglycan-associated outer membrane lipoprotein from Yersinia pestis CO92
Maltseva, N., Kim, Y., Osipiuk, J., Anderson, W.F., Joachimiak, A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Peptidoglycan-associated lipoprotein | 131 | Yersinia pestis CO92 | Mutation(s): 0  Gene Names: excC, pal, y3054, YPO1125, YP_1031 | ||
UniProt | |||||
Find proteins for A0A2U2GZX0 (Yersinia pestis) Explore A0A2U2GZX0  Go to UniProtKB:  A0A2U2GZX0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A2U2GZX0 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
POP Query on POP | G [auth C] | PYROPHOSPHATE 2- H2 O7 P2 XPPKVPWEQAFLFU-UHFFFAOYSA-L | |||
SO4 Query on SO4 | D [auth A], E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
FMT Query on FMT | F [auth C], H [auth C] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
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a = 65.015 | α = 90 |
b = 65.015 | β = 90 |
c = 86.967 | γ = 120 |
Software Name | Purpose |
---|---|
SBC-Collect | data collection |
HKL-3000 | data collection |
HKL-3000 | phasing |
MOLREP | phasing |
ARP/wARP | model building |
PHENIX | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |