4PN3 | pdb_00004pn3

Crystal structure of 3-hydroxyacyl-CoA-dehydrogenase from Brucella melitensis

• PDB DOI: https://doi.org/10.2210/pdb4PN3/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Brucella melitensis 64/150
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2014-05-22 Released: 2014-06-25 
• Deposition Author(s): Lukacs, C.M., Abendroth, J., Edwards, T.E., Lorimer, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.15 Å
• R-Value Free: 
  0.264 (Depositor), 0.296 (DCC) 
• R-Value Work: 
  0.236 (Depositor) 
• R-Value Observed: 
  0.237 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of 3-hydroxyacyl-CoA-dehydrogenase from Brucella melitensis

Lukacs, C.M., Abendroth, J., Edwards, T.E., Lorimer, D.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 219.07 kDa 
• Atom Count: 14,988 
• Modeled Residue Count: 2,043 
• Deposited Residue Count: 2,104 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-hydroxyacyl-CoA dehydrogenase	A, B, C, D, E, F, G, H	263	Brucella melitensis 64/150	Mutation(s): 0  Gene Names: C045_02890

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
TRS	I [auth B], J [auth D], K [auth F], L [auth G]	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.15 Å
• R-Value Free:  0.264 (Depositor), 0.296 (DCC) 
• R-Value Work:  0.236 (Depositor) 
• R-Value Observed: 0.237 (Depositor) 

Diffraction Data: https://doi.org/10.18430/M34PN3

Space Group: P 4₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 72.84	α = 90
b = 72.84	β = 90
c = 350.41	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-06-25 
Deposition Author(s): Lukacs, C.M., Abendroth, J., Edwards, T.E., Lorimer, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History  

• Version 1.0: 2014-06-25
  Type: Initial release
  
• Version 1.1: 2023-09-27
  Changes: Data collection, Database references, Derived calculations, Other, Refinement description, Source and taxonomy