Defining a Molecular Determinant of Lysine-Mediated Allosteric Inhibition of DHDPS.
Wubben, J.M., Paxman, J.J., Dogovski, C., Panjikar, S., Perugini, M.A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
4-hydroxy-tetrahydrodipicolinate synthase | 295 | Shewanella benthica KT99 | Mutation(s): 0  Gene Names: dapA, KT99_11964 EC: 4.3.3.7 | ![]() | |
UniProt | |||||
Find proteins for A9DKW4 (Shewanella benthica KT99) Explore A9DKW4  Go to UniProtKB:  A9DKW4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A9DKW4 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
FLC Query on FLC | H [auth B] | CITRATE ANION C6 H5 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-K | |||
LYS Query on LYS | C [auth A], D [auth A], G [auth B] | LYSINE C6 H15 N2 O2 KDXKERNSBIXSRK-YFKPBYRVSA-O | |||
GOL Query on GOL | E [auth A], I [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
NA Query on NA | F [auth A], J [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
KPI Query on KPI | A, B | L-PEPTIDE LINKING | C9 H16 N2 O4 | LYS |
Length ( Å ) | Angle ( ˚ ) |
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a = 74.273 | α = 90 |
b = 83.929 | β = 90 |
c = 143.868 | γ = 90 |
Software Name | Purpose |
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PHASER | phasing |
REFMAC | refinement |
XDS | data reduction |
SCALA | data scaling |