4PAV | pdb_00004pav

Structure of hypothetical protein SA1046 from S. aureus.

PDB DOI: https://doi.org/10.2210/pdb4PAV/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Staphylococcus aureus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2014-04-10 Released: 2015-05-06
Deposition Author(s): Battaile, K.P., Mulichak, A., Lam, R., Lam, K., Soloveychik, M., Romanov, V., Jones, K., Pai, E.F., Chirgadze, N.Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.226 (Depositor), 0.244 (DCC)
R-Value Work:
0.201 (Depositor), 0.215 (DCC)
R-Value Observed:
0.203 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 4PAV

This is version 1.2 of the entry. See complete history.

Literature

Structure of hypothetical protein SA1046 from S. aureus.

Battaile, K.P., Mulichak, A., Lam, R., Lam, K., Soloveychik, M., Romanov, V., Jones, K., Pai, E.F., Chirgadze, N.Y.

To be published.

Macromolecule Content

Total Structure Weight: 100.35 kDa
Atom Count: 6,095
Modeled Residue Count: 755
Deposited Residue Count: 870
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glyoxalase family protein	A, B, C, D, E A, B, C, D, E, F	145	Staphylococcus aureus	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D, E A, B, C, D, E, F	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.226 (Depositor), 0.244 (DCC)
R-Value Work: 0.201 (Depositor), 0.215 (DCC)
R-Value Observed: 0.203 (Depositor)

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 96.65	α = 90
b = 96.65	β = 90
c = 204.12	γ = 120

Software Package:

Software Name	Purpose
BUSTER	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2015-05-06

Deposition Author(s):

Soloveychik, M.

Chirgadze, N.Y.

Revision History (Full details and data files)

Version 1.0: 2015-05-06
Type: Initial release
Version 1.1: 2023-12-27
Changes: Data collection, Database references, Derived calculations, Other, Refinement description, Source and taxonomy
Version 1.2: 2024-10-23
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.