4P6Y | pdb_00004p6y

Crystal structure of the M42 aminopeptidase TmPep1050 from Thermotoga maritima

PDB DOI: https://doi.org/10.2210/pdb4P6Y/pdb

Classification: HYDROLASE
Organism(s): Thermotoga maritima MSB8
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2014-03-25 Released: 2015-04-08
Deposition Author(s): Dutoit, R., Demarez, M., Van Elder, D., Bauvois, C.
Funding Organization(s): Fonds de la Recherche Scientifique (FNRS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.247 (Depositor), 0.246 (DCC)
R-Value Work:
0.212 (Depositor), 0.213 (DCC)
R-Value Observed:
0.214 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of the M42 aminopeptidase TmPep1050 from Thermotoga maritima

Dutoit, R., Brandt, N., Durisotti, V., Oudjama, Y., Demarez, M., Van Elder, D., Bauvois, C.

To be published.

Macromolecule Content

Total Structure Weight: 433.32 kDa
Atom Count: 32,192
Modeled Residue Count: 3,964
Deposited Residue Count: 3,972
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Aminopeptidase	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	331	Thermotoga maritima MSB8	Mutation(s): 0 Gene Names: TM_1050, THEMA_09110, Tmari_1054 EC: 3.2.1.4
UniProt
Find proteins for Q9X0E0 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9X0E0 Go to UniProtKB: Q9X0E0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9X0E0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.247 (Depositor), 0.246 (DCC)
R-Value Work: 0.212 (Depositor), 0.213 (DCC)
R-Value Observed: 0.214 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 114.26	α = 114.46
b = 114.57	β = 91.71
c = 114.04	γ = 105.69

Software Package:

Software Name	Purpose
PHENIX	refinement

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2015-04-08

Deposition Author(s):

Funding Organization	Location	Grant Number
Fonds de la Recherche Scientifique (FNRS)	Belgium	IISN 4.4505.00

Revision History (Full details and data files)

Version 1.0: 2015-04-08
Type: Initial release
Version 1.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Other, Refinement description, Source and taxonomy

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.