4P15 | pdb_00004p15

Structure of the ClpC N-terminal domain from an alkaliphilic Bacillus lehensis G1 species

• PDB DOI: https://doi.org/10.2210/pdb4P15/pdb

• Classification: HYDROLASE
• Organism(s): Shouchella lehensis
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2014-01-31 Released: 2014-07-30 
• Deposition Author(s): Rashid, S.A., Littler, D.R., Illias, R.M., Murad, A.M.A., Rossjohn, J., Beddoe, T., Mahadi, N.M.
• Funding Organization(s): Malaysia Genome Institute

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.85 Å
• R-Value Free: 
  0.240 (Depositor), 0.235 (DCC) 
• R-Value Work: 
  0.210 (Depositor), 0.211 (DCC) 
• R-Value Observed: 
  0.211 (Depositor) 

Literature

Structure of the ClpC N-terminal domain at 1.85 Angstroms resolution from an alkaliphilic Bacillus lehensis G1 species

Rashid, S.A., Littler, D.R.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 16.08 kDa 
• Atom Count: 1,084 
• Modeled Residue Count: 137 
• Deposited Residue Count: 146 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bacillus lehensis ClpC N-terminal domain	A	146	Shouchella lehensis	Mutation(s): 0
UniProt
Find proteins for A0A087WNH8 (Shouchella lehensis) Explore A0A087WNH8  Go to UniProtKB:  A0A087WNH8

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	B [auth A], C [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.85 Å
• R-Value Free:  0.240 (Depositor), 0.235 (DCC) 
• R-Value Work:  0.210 (Depositor), 0.211 (DCC) 
• R-Value Observed: 0.211 (Depositor) 

Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 84.62	α = 90
b = 84.62	β = 90
c = 32.15	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2014-07-30 
Deposition Author(s): Rashid, S.A., Littler, D.R., Illias, R.M., Murad, A.M.A., Rossjohn, J., Beddoe, T., Mahadi, N.M.

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Funding Organization	Location	Grant Number
Malaysia Genome Institute	Malaysia	--

Revision History  

• Version 1.0: 2014-07-30
  Type: Initial release
  
• Version 1.1: 2023-12-27
  Changes: Data collection, Database references, Derived calculations, Other, Refinement description, Source and taxonomy