4ONS | pdb_00004ons

Structural and thermodynamic characterization of cadherin-beta-catenin-alpha-catenin complex formation


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 
    0.264 (Depositor), 0.270 (DCC) 
  • R-Value Work: 
    0.203 (Depositor), 0.211 (DCC) 
  • R-Value Observed: 
    0.207 (Depositor) 

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history

Literature

Structural and Thermodynamic Characterization of Cadherin beta-Catenin alpha-Catenin Complex Formation.

Pokutta, S.Choi, H.J.Ahlsen, G.Hansen, S.D.Weis, W.I.

(2014) J Biological Chem 289: 13589-13601

  • DOI: https://doi.org/10.1074/jbc.M114.554709
  • Primary Citation Related Structures: 
    4ONS

  • PubMed Abstract: 

    The classical cadherin·β-catenin·α-catenin complex mediates homophilic cell-cell adhesion and mechanically couples the actin cytoskeletons of adjacent cells. Although α-catenin binds to β-catenin and to F-actin, β-catenin significantly weakens the affinity of α-catenin for F-actin. Moreover, α-catenin self-associates into homodimers that block β-catenin binding. We investigated quantitatively and structurally αE- and αN-catenin dimer formation, their interaction with β-catenin and the cadherin·β-catenin complex, and the effect of the α-catenin actin-binding domain on β-catenin association. The two α-catenin variants differ in their self-association properties: at physiological temperatures, αE-catenin homodimerizes 10× more weakly than does αN-catenin but is kinetically trapped in its oligomeric state. Both αE- and αN-catenin bind to β-catenin with a Kd of 20 nM, and this affinity is increased by an order of magnitude when cadherin is bound to β-catenin. We describe the crystal structure of a complex representing the full β-catenin·αN-catenin interface. A three-dimensional model of the cadherin·β-catenin·α-catenin complex based on these new structural data suggests mechanisms for the enhanced stability of the ternary complex. The C-terminal actin-binding domain of α-catenin has no influence on the interactions with β-catenin, arguing against models in which β-catenin weakens actin binding by stabilizing inhibitory intramolecular interactions between the actin-binding domain and the rest of α-catenin.


  • Organizational Affiliation
    • From the Departments of Structural Biology and Molecular and Cellular Physiology, Stanford University, Stanford, California 94305.

Macromolecule Content 

  • Total Structure Weight: 74.53 kDa 
  • Atom Count: 4,318 
  • Modeled Residue Count: 552 
  • Deposited Residue Count: 672 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Catenin alpha-2
A, C
248Mus musculusMutation(s): 0 
Gene Names: Ctnna2Catna2
UniProt
Find proteins for Q61301 (Mus musculus)
Explore Q61301 
Go to UniProtKB:  Q61301
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ61301
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Catenin beta-1
B, D
88Mus musculusMutation(s): 0 
Gene Names: Ctnnb1Catnb
UniProt & NIH Common Fund Data Resources
Find proteins for Q02248 (Mus musculus)
Explore Q02248 
Go to UniProtKB:  Q02248
IMPC:  MGI:88276
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ02248
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free:  0.264 (Depositor), 0.270 (DCC) 
  • R-Value Work:  0.203 (Depositor), 0.211 (DCC) 
  • R-Value Observed: 0.207 (Depositor) 
Space Group: P 31
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 96.125α = 90
b = 96.125β = 90
c = 65.517γ = 120
Software Package:
Software NamePurpose
SCALAdata scaling
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata scaling
XSCALEdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-04-09
    Type: Initial release
  • Version 1.1: 2014-05-07
    Changes: Database references
  • Version 1.2: 2014-05-28
    Changes: Database references
  • Version 1.3: 2024-02-28
    Changes: Data collection, Database references