4NXJ | pdb_00004nxj

Crystal Structure of PF3D7_1475600, a bromodomain from Plasmodium Falciparum

PDB DOI: https://doi.org/10.2210/pdb4NXJ/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Plasmodium falciparum 3D7
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2013-12-09 Released: 2014-03-19
Deposition Author(s): Wernimont, A.K., Loppnau, P., Knapp, S., Fonseca, M., Brennan, P.E., Dong, A., Walker, J.R., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Hui, R., Hutchinson, A., Structural Genomics Consortium (SGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.18 Å
R-Value Free:
0.250 (Depositor), 0.243 (DCC)
R-Value Work:
0.203 (Depositor), 0.215 (DCC)
R-Value Observed:
0.205 (Depositor)

Starting Model: experimental
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This is version 1.3 of the entry. See complete history.

Literature

Crystal Structure of PF3D7_1475600, a bromodomain from Plasmodium Falciparum

Wernimont, A.K., Loppnau, P., Knapp, S., Fonseca, M., Brennan, P.E., Dong, A., Walker, J.R., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Hui, R., Hutchinson, A.

To be published.

Macromolecule Content

Total Structure Weight: 43.3 kDa
Atom Count: 3,149
Modeled Residue Count: 352
Deposited Residue Count: 357
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bromodomain protein	A, B, C	119	Plasmodium falciparum 3D7	Mutation(s): 0 Gene Names: PF14_0724
UniProt
Find proteins for Q8IK82 (Plasmodium falciparum (isolate 3D7)) Explore Q8IK82 Go to UniProtKB: Q8IK82
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8IK82
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.18 Å
R-Value Free: 0.250 (Depositor), 0.243 (DCC)
R-Value Work: 0.203 (Depositor), 0.215 (DCC)
R-Value Observed: 0.205 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 41.24	α = 90
b = 41.352	β = 93.37
c = 107.432	γ = 90

Software Package:

Software Name	Purpose
Aimless	data scaling
BUSTER-TNT	refinement
PDB_EXTRACT	data extraction
XSCALE	data scaling
PHASER	phasing
BUSTER	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2014-03-19

Deposition Author(s):

Wernimont, A.K.

Arrowsmith, C.H.

Structural Genomics Consortium (SGC)

Revision History (Full details and data files)

Version 1.0: 2014-03-19
Type: Initial release
Version 1.1: 2014-03-26
Changes: Other
Version 1.2: 2017-11-22
Changes: Refinement description
Version 1.3: 2023-09-20
Changes: Data collection, Database references, Refinement description