4N0V | pdb_00004n0v

Crystal structure of a glutathione S-transferase domain-containing protein (Marinobacter aquaeolei VT8), Target EFI-507332

• PDB DOI: https://doi.org/10.2210/pdb4N0V/pdb

• Classification: TRANSFERASE
• Organism(s): Marinobacter nauticus VT8
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2013-10-02 Released: 2013-10-16 
• Deposition Author(s): Kim, J., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Glenn, A.S., Chowdhury, S., Evans, B., Zhao, S.C., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Stead, M., Jacobson, M.P., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 
  0.221 (Depositor), 0.235 (DCC) 
• R-Value Work: 
  0.193 (Depositor) 
• R-Value Observed: 
  0.195 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of a glutathione S-transferase domain-containing protein (Marinobacter aquaeolei VT8), Target EFI-507332

Kim, J., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Zhao, S., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Stead, M., Jacobson, M.P., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 49.45 kDa 
• Atom Count: 3,408 
• Modeled Residue Count: 418 
• Deposited Residue Count: 448 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutathione S-transferase, N-terminal domain	A, B	224	Marinobacter nauticus VT8	Mutation(s): 0  Gene Names: Maqu_0585
UniProt
Find proteins for A1TY67 (Marinobacter nauticus (strain ATCC 700491 / DSM 11845 / VT8)) Explore A1TY67  Go to UniProtKB:  A1TY67

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free:  0.221 (Depositor), 0.235 (DCC) 
• R-Value Work:  0.193 (Depositor) 
• R-Value Observed: 0.195 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 66.607	α = 90
b = 70.784	β = 90
c = 98.776	γ = 90

Software Package:

Software Name	Purpose
MOLREP	phasing
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2013-10-16 
Deposition Author(s): Kim, J., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Glenn, A.S., Chowdhury, S., Evans, B., Zhao, S.C., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Stead, M., Jacobson, M.P., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

Revision History  

• Version 1.0: 2013-10-16
  Type: Initial release
  
• Version 1.1: 2018-01-24
  Changes: Database references
• Version 1.2: 2018-01-31
  Changes: Structure summary
• Version 1.3: 2023-09-20
  Changes: Data collection, Database references, Refinement description