4LRI | pdb_00004lri

Anti CMV Fab Fragment


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 
    0.212 (Depositor), 0.208 (DCC) 
  • R-Value Work: 
    0.187 (Depositor), 0.184 (DCC) 
  • R-Value Observed: 
    0.188 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 4LRI

This is version 1.2 of the entry. See complete history

Literature

Mechanism for neutralizing activity by the anti-CMV gH/gL monoclonal antibody MSL-109.

Fouts, A.E.Comps-Agrar, L.Stengel, K.F.Ellerman, D.Schoeffler, A.J.Warming, S.Eaton, D.L.Feierbach, B.

(2014) Proc Natl Acad Sci U S A 111: 8209-8214

  • DOI: https://doi.org/10.1073/pnas.1404653111
  • Primary Citation Related Structures: 
    4LRI

  • PubMed Abstract: 

    Cytomegalovirus (CMV) is a widespread opportunistic pathogen that causes birth defects when transmitted transplacentally and severe systemic illness in immunocompromised individuals. MSL-109, a human monoclonal IgG isolated from a CMV seropositive individual, binds to the essential CMV entry glycoprotein H (gH) and prevents infection of cells. Here, we suggest a mechanism for neutralization activity by MSL-109. We define a genetic basis for resistance to MSL-109 and have generated a structural model of gH that reveals the epitope of this neutralizing antibody. Using surface-based, time-resolved FRET, we demonstrate that gH/gL interacts with glycoprotein B (gB). Additionally, we detect homodimers of soluble gH/gL heterodimers and confirm this novel oligomeric assembly on full-length gH/gL expressed on the cell surface. We show that MSL-109 perturbs the dimerization of gH/gL:gH/gL, suggesting that dimerization of gH/gL may be required for infectivity. gH/gL homodimerization may be conserved between alpha- and betaherpesviruses, because both CMV and HSV gH/gL demonstrate self-association in the FRET system. This study provides evidence for a novel mechanism of action for MSL-109 and reveals a previously undescribed aspect of viral entry that may be susceptible to therapeutic intervention.


  • Organizational Affiliation
    • Departments of Infectious Diseases.

Macromolecule Content 

  • Total Structure Weight: 97.81 kDa 
  • Atom Count: 7,407 
  • Modeled Residue Count: 879 
  • Deposited Residue Count: 904 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
MSL-109 Light Chain
A, B
219Homo sapiensMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
MSL-109 Heavy ChainC [auth P],
D [auth C]
233Homo sapiensMutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free:  0.212 (Depositor), 0.208 (DCC) 
  • R-Value Work:  0.187 (Depositor), 0.184 (DCC) 
  • R-Value Observed: 0.188 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 73.619α = 90
b = 101.649β = 90
c = 113.794γ = 90
Software Package:
Software NamePurpose
PHASERphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-05-21
    Type: Initial release
  • Version 1.1: 2014-07-02
    Changes: Database references
  • Version 1.2: 2024-11-20
    Changes: Data collection, Database references, Structure summary