4LDP | pdb_00004ldp

Spinosyn Forosaminyltransferase SpnP

PDB DOI: https://doi.org/10.2210/pdb4LDP/pdb

Classification: TRANSFERASE
Organism(s): Saccharopolyspora spinosa
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2013-06-24 Released: 2014-12-24
Deposition Author(s): Isiorho, E.A., Liu, H.-W., Keatinge-Clay, A.K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.257 (Depositor), 0.257 (DCC)
R-Value Work:
0.200 (Depositor), 0.201 (DCC)
R-Value Observed:
0.203 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 4LDP

This is version 1.1 of the entry. See complete history.

Literature

SpnP; Structural Insights into the Activation of GT-1 Glycosyltransferases by Helper Proteins

Isiorho, E.A., Jeon, B.-S., Liu, H.-W., Keatinge-Clay, A.K.

To be published.

Macromolecule Content

Total Structure Weight: 101 kDa
Atom Count: 5,856
Modeled Residue Count: 742
Deposited Residue Count: 910
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NDP-forosamyltransferase	A, B	455	Saccharopolyspora spinosa	Mutation(s): 0 Gene Names: spnP
UniProt
Find proteins for Q9ALN7 (Saccharopolyspora spinosa) Explore Q9ALN7 Go to UniProtKB: Q9ALN7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9ALN7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.257 (Depositor), 0.257 (DCC)
R-Value Work: 0.200 (Depositor), 0.201 (DCC)
R-Value Observed: 0.203 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 162.421	α = 90
b = 162.421	β = 90
c = 81.228	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
PHASER	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2014-12-24

Deposition Author(s):

Keatinge-Clay, A.K.

Revision History (Full details and data files)

Version 1.0: 2014-12-24
Type: Initial release
Version 1.1: 2024-02-28
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.