4KUN | pdb_00004kun

Crystal structure of Legionella pneumophila Lpp1115 / KaiB


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 
    0.247 (Depositor), 0.248 (DCC) 
  • R-Value Work: 
    0.191 (Depositor), 0.191 (DCC) 
  • R-Value Observed: 
    0.194 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 4KUN

This is version 1.4 of the entry. See complete history

Literature

The Legionella pneumophila kai operon is implicated in stress response and confers fitness in competitive environments.

Loza-Correa, M.Sahr, T.Rolando, M.Daniels, C.Petit, P.Skarina, T.Gomez Valero, L.Dervins-Ravault, D.Honore, N.Savchenko, A.Buchrieser, C.

(2014) Environ Microbiol 16: 359-381

  • DOI: https://doi.org/10.1111/1462-2920.12223
  • Primary Citation Related Structures: 
    4KUN

  • PubMed Abstract: 

    Legionella pneumophila uses aquatic protozoa as replication niche and protection from harsh environments. Although L. pneumophila is not known to have a circadian clock, it encodes homologues of the KaiBC proteins of Cyanobacteria that regulate circadian gene expression. We show that L. pneumophila kaiB, kaiC and the downstream gene lpp1114, are transcribed as a unit under the control of the stress sigma factor RpoS. KaiC and KaiB of L. pneumophila do not interact as evidenced by yeast and bacterial two-hybrid analyses. Fusion of the C-terminal residues of cyanobacterial KaiB to Legionella KaiB restores their interaction. In contrast, KaiC of L. pneumophila conserved autophosphorylation activity, but KaiB does not trigger the dephosphorylation of KaiC like in Cyanobacteria. The crystal structure of L. pneumophila KaiB suggests that it is an oxidoreductase-like protein with a typical thioredoxin fold. Indeed, mutant analyses revealed that the kai operon-encoded proteins increase fitness of L. pneumophila in competitive environments, and confer higher resistance to oxidative and sodium stress. The phylogenetic analysis indicates that L. pneumophila KaiBC resemble Synechosystis KaiC2B2 and not circadian KaiB1C1. Thus, the L. pneumophila Kai proteins do not encode a circadian clock, but enhance stress resistance and adaption to changes in the environments.


  • Organizational Affiliation
    • Institut Pasteur, Biologie des Bactéries Intracellulaires, Paris, France; CNRS UMR 3525, Paris, France.

Macromolecule Content 

  • Total Structure Weight: 20.34 kDa 
  • Atom Count: 1,546 
  • Modeled Residue Count: 181 
  • Deposited Residue Count: 182 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Hypothetical protein Lpp1115
A, B
91Legionella pneumophila str. ParisMutation(s): 0 
Gene Names: lpp1115

Small Molecules

Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free:  0.247 (Depositor), 0.248 (DCC) 
  • R-Value Work:  0.191 (Depositor), 0.191 (DCC) 
  • R-Value Observed: 0.194 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 40.83α = 90
b = 46.05β = 105.56
c = 45.079γ = 90
Software Package:
Software NamePurpose
HKL-3000data collection
SOLVEphasing
PHENIXrefinement
XDSdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2013-06-05
    Type: Initial release
  • Version 1.1: 2013-06-12
    Changes: Structure summary
  • Version 1.2: 2013-10-23
    Changes: Database references, Structure summary
  • Version 1.3: 2014-10-08
    Changes: Database references
  • Version 1.4: 2024-11-20
    Changes: Data collection, Database references, Derived calculations, Structure summary