Crystal Structure of the His70Thr mutant of Benzoylformate Decarboxylase from Pseudomonas putida
Brodkin, H.R., Andrews, F.H., Milne, A.C., Petsko, G.A., Ringe, D., McLeish, M.J.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Benzoylformate decarboxylase | 534 | Pseudomonas putida | Mutation(s): 1  Gene Names: mdlC EC: 4.1.1.7 | ||
UniProt | |||||
Find proteins for P20906 (Pseudomonas putida) Explore P20906  Go to UniProtKB:  P20906 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P20906 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
TPP Query on TPP | G [auth A], L [auth B], N [auth C], P [auth D] | THIAMINE DIPHOSPHATE C12 H19 N4 O7 P2 S AYEKOFBPNLCAJY-UHFFFAOYSA-O | |||
GOL Query on GOL | I [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
CA Query on CA | F [auth A], K [auth B], M [auth C], O [auth D] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
MG Query on MG | E [auth A], H [auth A], J [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 70.465 | α = 90 |
b = 161.682 | β = 90 |
c = 175.874 | γ = 90 |
Software Name | Purpose |
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BlueIce-Epics | data collection |
PHENIX | model building |
PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
PHENIX | phasing |