4JOX | pdb_00004jox

Crystal structure of cry34Ab1 protein at 2.15 A resolution

PDB DOI: https://doi.org/10.2210/pdb4JOX/pdb

Classification: TOXIN
Organism(s): Bacillus thuringiensis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2013-03-19 Released: 2014-04-23
Deposition Author(s): Yang, C., Pflugrath, J.W., Kelker, M.S., Evan, S.L., Narva, K.E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free:
0.279 (Depositor), 0.281 (DCC)
R-Value Work:
0.234 (Depositor), 0.241 (DCC)
R-Value Observed:
0.238 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 4JOX

This is version 1.1 of the entry. See complete history.

Literature

Structural and biophysical characterization of Cry34Ab1 and Cry35Ab1.

Kelker, M.S., Berry, C., Evans, S.L., Pai, R., McCaskill, D., Pflugrath, J.W., Wade, M., Wess, T.J., Baker, M.D., Yang, C., Narva, K.E., McCaskill, D.G., Wang, N.X., Russell, J.C.

To be published.

Macromolecule Content

Total Structure Weight: 13.62 kDa
Atom Count: 991
Modeled Residue Count: 118
Deposited Residue Count: 123
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
13.6 kDa insecticidal crystal protein	A	123	Bacillus thuringiensis	Mutation(s): 0
UniProt
Find proteins for Q939T0 (Bacillus thuringiensis) Explore Q939T0 Go to UniProtKB: Q939T0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q939T0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free: 0.279 (Depositor), 0.281 (DCC)
R-Value Work: 0.234 (Depositor), 0.241 (DCC)
R-Value Observed: 0.238 (Depositor)

Space Group: I 4 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 100.561	α = 90
b = 100.561	β = 90
c = 56.196	γ = 90

Software Package:

Software Name	Purpose
CrystalClear	data collection
MLPHARE	phasing
REFMAC	refinement
d*TREK	data reduction
d*TREK	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2014-04-23

Deposition Author(s):

Pflugrath, J.W.

Revision History (Full details and data files)

Version 1.0: 2014-04-23
Type: Initial release
Version 1.1: 2024-02-28
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.