Docking to a water-filled model binding site in Cytochrome c Peroxidase
Barelier, S., Boyce, S.E., Fish, I., Fischer, M., Goodin, D.B., Shoichet, B.K.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome c peroxidase | 289 | Saccharomyces cerevisiae RM11-1a | Mutation(s): 2  Gene Names: CCP1 CCP CPO YKR066C, SCRG_04081 EC: 1.11.1.5 | ||
UniProt | |||||
Find proteins for B3LRE1 (Saccharomyces cerevisiae (strain RM11-1a)) Explore B3LRE1  Go to UniProtKB:  B3LRE1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B3LRE1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
HEM Query on HEM | B [auth A] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L | |||
1LZ Query on 1LZ | C [auth A] | 1H-pyrrolo[3,2-b]pyridin-6-ylmethanol C8 H8 N2 O PHEOXCPRDIGDAZ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 106.47 | α = 90 |
b = 74.58 | β = 90 |
c = 51.3 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
PDB_EXTRACT | data extraction |
ADSC | data collection |
XDS | data reduction |
XDS | data scaling |
PHENIX | refinement |