Crystal structure Mistletoe Lectin I from Viscum album in complex with kinetin at 2.35 A resolution.
Prokofev, I.I., Lashkov, A.A., Gabdoulkhakov, A.G., Meyer, A., Barciszewski, J., Betzel, C., Mikhailov, A.M.To be published.
Experimental Data Snapshot
Starting Model: experimental
View more details
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-galactoside-specific lectin 1 A chain | 249 | Viscum album | Mutation(s): 0 EC: 3.2.2.22 | ||
UniProt | |||||
Find proteins for P81446 (Viscum album) Explore P81446 Go to UniProtKB: P81446 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P81446 | ||||
Glycosylation | |||||
Glycosylation Sites: 1 | |||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-galactoside-specific lectin 1 B chain | 263 | Viscum album | Mutation(s): 0 EC: 3.2.2.22 | ||
UniProt | |||||
Find proteins for P81446 (Viscum album) Explore P81446 Go to UniProtKB: P81446 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P81446 | ||||
Glycosylation | |||||
Glycosylation Sites: 3 | |||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | C | 2 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan: G42666HT GlyCosmos: G42666HT GlyGen: G42666HT |
Entity ID: 4 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | D | 3 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan: G47362BJ GlyCosmos: G47362BJ GlyGen: G47362BJ |
Ligands 8 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | F [auth A], S [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
H35 Query on H35 | I [auth A] | N-(FURAN-2-YLMETHYL)-7H-PURIN-6-AMINE C10 H9 N5 O QANMHLXAZMSUEX-UHFFFAOYSA-N | |||
SO4 Query on SO4 | E [auth A], M [auth A], N [auth A], O [auth A], P [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GOL Query on GOL | AA [auth B] BA [auth B] CA [auth B] DA [auth B] EA [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
DIO Query on DIO | K [auth A] | 1,4-DIETHYLENE DIOXIDE C4 H8 O2 RYHBNJHYFVUHQT-UHFFFAOYSA-N | |||
EDO Query on EDO | J [auth A] T [auth B] U [auth B] V [auth B] W [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
AZI Query on AZI | R [auth B] | AZIDE ION N3 IVRMZWNICZWHMI-UHFFFAOYSA-N | |||
CL Query on CL | FA [auth B], Q [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Entity ID: 4 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900017 Query on PRD_900017 | D | triacetyl-beta-chitotriose | Oligosaccharide / Inhibitor |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 107.01 | α = 90 |
b = 107.01 | β = 90 |
c = 312.42 | γ = 120 |
Software Name | Purpose |
---|---|
XSCALE | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
DNA | data collection |
XDS | data reduction |
MOLREP | phasing |