Crystal structure of the pyridoxal-5'-phosphate dependent protein yhfs from escherichia coli
Fedorov, A.A., Fedorov, E.V., Xiang, D.F., Raushel, F.M., Almo, S.C.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Uncharacterized protein YhfS | 361 | Escherichia coli K-12 | Mutation(s): 0  Gene Names: yhfS, b3376, JW3339 | ||
UniProt | |||||
Find proteins for P45545 (Escherichia coli (strain K12)) Explore P45545  Go to UniProtKB:  P45545 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P45545 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PEG Query on PEG | F [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
ACY Query on ACY | C [auth A], D [auth A], E [auth A] | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N | |||
NI Query on NI | B [auth A] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |
Modified Residues 2 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
LLP Query on LLP | A | L-PEPTIDE LINKING | C14 H22 N3 O7 P | LYS | |
MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 134.915 | α = 90 |
b = 134.915 | β = 90 |
c = 75.142 | γ = 120 |
Software Name | Purpose |
---|---|
CBASS | data collection |
PHENIX | model building |
PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
PHENIX | phasing |