4HH8 | pdb_00004hh8

Crystal structure of bovine butyrophilin

PDB DOI: https://doi.org/10.2210/pdb4HH8/pdb

Classification: PROTEIN BINDING
Organism(s): Bos taurus
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2012-10-09 Released: 2013-11-13
Deposition Author(s): Eichinger, A., Skerra, A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.278 (Depositor), 0.268 (DCC)
R-Value Work:
0.226 (Depositor), 0.221 (DCC)
R-Value Observed:
0.228 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 4HH8

This is version 1.1 of the entry. See complete history.

Literature

The extracellular region of bovine butyrophilin exhibits high structural similarity to human myelin oligodendrocyte glycoprotein

Eichinger, A., Neumaier, I., Skerra, A.

To be published.

Macromolecule Content

Total Structure Weight: 25.28 kDa
Atom Count: 1,711
Modeled Residue Count: 211
Deposited Residue Count: 224
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Butyrophilin subfamily 1 member A1	A	224	Bos taurus	Mutation(s): 1 Gene Names: BTN, BTN1A1
UniProt
Find proteins for P18892 (Bos taurus) Explore P18892 Go to UniProtKB: P18892
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P18892
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.278 (Depositor), 0.268 (DCC)
R-Value Work: 0.226 (Depositor), 0.221 (DCC)
R-Value Observed: 0.228 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.18	α = 90
b = 101.02	β = 90
c = 44.31	γ = 90

Software Package:

Software Name	Purpose
MOSFLM	data reduction
SCALA	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
MAR345dtb	data collection
Auto-Rickshaw	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2013-11-13

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2013-11-13
Type: Initial release
Version 1.1: 2024-11-20
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.