Crystal Structure of ThiJ/PfpI Domain Protein from Brachyspira murdochii
Kim, Y., Bigelow, L., Jedrzejczak, R., Joachimiak, A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
ThiJ/PfpI domain protein | 177 | Brachyspira murdochii DSM 12563 | Mutation(s): 0  Gene Names: Bmur_0257 | ||
UniProt | |||||
Find proteins for D5U596 (Brachyspira murdochii (strain ATCC 51284 / DSM 12563 / 56-150)) Explore D5U596  Go to UniProtKB:  D5U596 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | D5U596 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
FMT Query on FMT | F [auth A] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N | |||
CL Query on CL | E [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
MG Query on MG | B [auth A], C [auth A], D [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 64.799 | α = 90 |
b = 42.197 | β = 116.95 |
c = 66.366 | γ = 90 |
Software Name | Purpose |
---|---|
SBC-Collect | data collection |
HKL-3000 | data collection |
HKL-3000 | phasing |
SHELXS | phasing |
MLPHARE | phasing |
RESOLVE | model building |
ARP/wARP | model building |
ahelx-97 | refinement |
PHENIX | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
RESOLVE | phasing |