Download MendeleyA Different Fold with an Integrin-Binding Loop Specialized for Flexibility in Mucosal Addressin Cell Adhesion Molecule-1
Springer, T., Yu, Y., Zhu, J., Wang, J.-H., Huang, P.-S.To be published.
4HC1
Crystal structure of a loop deleted mutant of human MAdCAM-1 D1D2 complexed with Fab 10G3
- PDB DOI: https://doi.org/10.2210/pdb4HC1/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens, Mus musculus
- Expression System: Homo sapiens, Mus musculus
- Mutation(s): Yes
- Deposited: 2012-09-28 Released: 2013-01-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.87 Å
- R-Value Free: 0.253
- R-Value Work: 0.200
- R-Value Observed: 0.203
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Mucosal addressin cell adhesion molecule 1 | A, D [auth B] | 206 | Homo sapiens | Mutation(s): 2 Gene Names: MADCAM1 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q13477 (Homo sapiens) Explore Q13477 Go to UniProtKB: Q13477 | |||||
PHAROS: Q13477 GTEx: ENSG00000099866 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q13477 | ||||
Glycosylation | |||||
| Glycosylation Sites: 1 | Go to GlyGen: Q13477-1 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 10G3 heavy chain | B [auth H], E [auth M] | 220 | Mus musculus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 10G3 light chain | C [auth L], F [auth N] | 214 | Mus musculus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | G [auth A], H [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.87 Å
- R-Value Free: 0.253
- R-Value Work: 0.200
- R-Value Observed: 0.203
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 317.854 | α = 90 |
| b = 71.727 | β = 93.29 |
| c = 70.557 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| PHASER | phasing |
| PHENIX | refinement |
| HKL-2000 | data reduction |
| SCALA | data scaling |
Entry History
Deposition Data
- Released Date: 2013-01-23 Deposition Author(s): Springer, T., Yu, Y., Zhu, J.
Revision History (Full details and data files)
- Version 1.0: 2013-01-23
Type: Initial release - Version 1.1: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations, Structure summary - Version 1.2: 2024-10-30
Changes: Data collection, Database references, Structure summary
