4H86 | pdb_00004h86

Crystal structure of Ahp1 from Saccharomyces cerevisiae in reduced form

PDB DOI: https://doi.org/10.2210/pdb4H86/pdb

Classification: OXIDOREDUCTASE
Organism(s): Saccharomyces cerevisiae S288C
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2012-09-21 Released: 2012-10-10
Deposition Author(s): Liu, M., Wang, F., Qiu, R., Wu, T., Gu, S., Tang, R., Ji, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.173 (Depositor), 0.173 (DCC)
R-Value Work:
0.158 (Depositor), 0.158 (DCC)
R-Value Observed:
0.158 (Depositor)

Starting Models: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of Ahp1 from Saccharomyces cerevisiae in reduced form

Liu, M., Wang, F., Qiu, R., Wu, T., Gu, S., Tang, R., Ji, C.

To be published.

Macromolecule Content

Total Structure Weight: 21.59 kDa
Atom Count: 1,694
Modeled Residue Count: 187
Deposited Residue Count: 199
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Peroxiredoxin type-2	A	199	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: AHP1, YLR109W, L2916, L9354.5 EC: 1.11.1.15 (PDB Primary Data), 1.11.1.24 (UniProt)
UniProt
Find proteins for P38013 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38013 Go to UniProtKB: P38013
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P38013
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.173 (Depositor), 0.173 (DCC)
R-Value Work: 0.158 (Depositor), 0.158 (DCC)
R-Value Observed: 0.158 (Depositor)

Space Group: I 2₁ 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 149.049	α = 90
b = 149.049	β = 90
c = 149.049	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data collection
HKL-2000	data reduction
PHENIX	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2012-10-10

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2012-10-10
Type: Initial release
Version 1.1: 2017-11-15
Changes: Refinement description
Version 1.2: 2023-11-08
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.